Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAGCACGCTTTTCATTTATGGGAGGAAAAGGCGGATCACTTTGGAAGCAGTTAGTGTTCAGATTGTCCCATCAAAGgtttgaaatcaatcctcttaactgttaattttttatttctttcttttcttcaattctttcttttatgtatcagattcttttcttttttaattatgttatt...
Basic information
species | Glycine max |
transcript | GLYMA10G35580.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04170.t01 (Vitis vinifera), 5'ss of exon 9
GGAAGAGCACGCTTTTCATTTATGGGAGGAAAAGGCGGATCACTTTGGAAGCAGTTAGTGTTCAGATTGTCCCATCAAAGgtttgaaatcaatcctcttaactgttaattttttatttctttcttttcttcaattctttcttttatgtatcagattcttttcttttttaattatgttatt----
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---AGGGCACGCTTTTCATTCATGGGAGGTAAAGGTGGATCTCTCTGGAAGCAGGTTACGTTTAAGTTGTCACATGAAAGgtttggacttatcaatct--act--cagtttttgccagatatttgatatttgtttttttctttaagatttgaagttctattccatggtgggcacaactgtgttt
upper sequence: GLYMA10G35580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04180.t01 (Vitis vinifera), 5'ss of exon 8
GGAAGAGCACGCTTTTCATTTATGGGAGGAAAAGGCGGATCACTTTGGAAGCAGTTAGTGTTCAGATTGTCCCATCAAAGgtttgaaatcaatcctcttaactgtta-attttttatttctttc---ttttcttcaattctttct-tttatgtatcagattcttttcttttttaattatgttatt--------------------------------------------
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---AGAGGGCGTTTTTCGTTTATGGGAGCTAAAGGTGGATCTCTTTGGAAGCAATTCACCTTCAGACTGTCCCATAAAAGgtttgaa-tatttcaatttagtttccataatggctatatcattgagatttgatctgatgccttatatctattta-catagttttttatgcatctataaggccattgtgttacttttaaaagtgatacatcggtgtccctcttttgtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207703184|gb|GD684374.1|GD684374EST: AAAGGCGGATCACTTTGGAAGCAGTTAGTGTTCAGATTGTCCCATCAAAG TGATGGGAGTTCAAAAGGAGGTGGTTATTTGTCAACTGAAGATTCTCAAGG
genomic: AAAGGCGGATCACTTTGGAAGCAGTTAGTGTTCAGATTGTCCCATCAAAGgtttgaaatc ... ctttttccagTGATGGGAGTTCAAAAGGAGGTGGTTATTTGTCAACTGAAGATTCTCAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAGCACGCTTTTCATTTATGGGAGGAAAAGGCGGATCACTTTGGAAGCAGTTAGTGTTCAGATTGTCCCATCAAAGgtttgaaatcaatcctcttaactgttaattttttatttctttcttttcttcaattctttcttttatgtatcagattcttttcttttttaattatgttatt
- - - - - - - - - - - - - - - - - - - - - - TGGAAG