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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatgtatatgtccgagtgcccttgtcttatgatattggccgactaaacagggatcaattgaacaatgttattttcttgatcacttgtgtctgaagtgtgttctaatggcttagtgaaattattatag

Basic information

species Glycine max
transcript GLYMA10G35560.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 9
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatgtatatgtccgagtgcccttgtcttat--gatattggccgactaaacag--ggatcaattgaacaatgttattttcttgatcacttgtgtctgaagtgtgttctaatggcttagtgaaattattatag
|| ||| |||| || || || ||||||||||| ||||| || ||||||  ||||||  | |||||||| ||||| ||| ||||||| || || ||||||||||   |||     ||||   | | ||      || |||||  ||   | ||   ||  ||    ||  | || |||   ||     |     |                                                    
CTTGGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCGCTACCTGCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGgtatagaaa----gttatacttttctct-----cctttgtccaatctaaaatcaacctcctttggagctgtataaatcatacgcaaatgaacccgcag------------------------------------------------

upper sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 9
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatgtatatgtccgagtgcccttgtcttatgatattggccgactaaacagggatc--aattgaacaatgttattttcttgatcacttgtgtctgaagtgtgttctaatggcttagtgaaattattatag
|| ||||||||||| ||  | |||||||||||| |||| || | |||||| |||||| |||||||| | |  |||||| ||||||| ||||| |||||||||| |  || | | || |              |   |||| |||  | |    || |  ||| |  | ||  |   |||||||| || || |||   ||   |  |||||  |||  |  |    | | |              
CTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTGCAGgta-tggaattggtttgt-------------cgtatttgttttaaaaaacccaccaaaaaaaaaaagttctaaggagaacaatgatacttacttttccaa--gcttctgat-tgtcattgagaatccttgcag-----------

upper sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 9
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgct-tatgtatatgtccgagtgccctt---gtcttatgatattggccgactaaacagg--gatcaattgaa---caatgttat-----tttcttgatcacttgtgtctgaagtgtgttct--aatggcttagtgaaattattatag-------------
|| || |||||||| ||||| ||||||||||||||  | |||||||||||| ||||||| |||||||| ||||||||| | ||||| ||||| ||||||||||   ||||||    |   | |  ||   | |  |||       ||   || | ||  |  |||  ||   ||| | |||||   ||||  |||     ||   |  ||| |  |   |||  |   ||||    |   |      | |||| || |             
CTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276418|gb|BI941848.1|BI941848
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|16276792|gb|BI942046.1|BI942046
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|193486868|gb|FK450449.1|FK450449
EST:     TTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|120532705|gb|EH260838.1|EH260838
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|10843361|gb|BF066663.1|BF066663
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|254333630|gb|GR848548.1|GR848548
EST:     ATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: ATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|33387796|gb|CA851003.1|CA851003
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|16277466|gb|BI942396.1|BI942396
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|19053065|gb|BM731732.1|BM731732
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|19268860|gb|BM885116.1|BM885116
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|16282970|gb|BI945300.1|BI945300
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|208201922|gb|GD997013.1|GD997013
EST:     TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC
EST: gi|7691321|gb|AW759514.1|AW759514
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: TATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... attattatagGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAAC