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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGgtatgacttataactggtgcatataacgatatattggtgaattgacttataatttagtgtcaccaaccctaccaagaaggactttggctttaaggtttaa...

Basic information

species Glycine max
transcript GLYMA10G35320.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 9
GCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGgtatgacttataactggtgcatataacgatatattggtgaattgacttataatttagtgtcaccaaccctaccaagaaggactttggcttta-aggtttaa
||||| ||||| |||  ||| |||||||| ||| |||||||||| || || || ||||| || || || || ||||||||||| || |||||||| ||||||  |   || |        | |    |   |||  |    |  ||  |||    ||||          | |   ||  |  |||   ||| |   ||||
GCTGACAAATTAGAGCGACTAAGGGAGAGAATGGTAAAAGTGCGGGAGCTTTTCCGTGACACAGACTCGACAGAATTTGTCATAGTAACAATCCCTACGgtaaaaaccattataaaaatgttttggcactgattatttctgtttctagtaaag-ggtgtgtttggttgcagctgcaaatatattgttgttataaccttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258515|gb|BE346662.1|BE346662
EST:     TCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACG                         GTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAN
genomic: TCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGgtatgactta ... actccctcagGTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAA
EST: gi|7796764|gb|AW782158.1|AW782158
EST:     TCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACG                         GTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAA
genomic: TCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGgtatgactta ... actccctcagGTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAA
EST: gi|9903231|gb|BE612199.1|BE612199
EST:     TCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACG                         GTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAA
genomic: TCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGgtatgactta ... actccctcagGTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAA