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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAGCAACTGTTCTATTTCCAGAAGTGGAAGTCCCCAAGTGGGGTGCTGTGTATATACCTTCTATCATCACACTCCTTAATGCAGTTGGAACTCCAAGgtaaacattttaagttggcaaaacttggtaaagaaggttttcttttgttcatttgttattgtgagtaacttgtgtacatcttatgcag

Basic information

species Glycine max
transcript GLYMA10G34550.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34550.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0074g00500.t01 (Vitis vinifera), 5'ss of exon 7
TGCCAGCAACTGTTCTATTTCCAGAAGTGGAAGTCCCCAAGTGGGGTGCTGTGTATATACCTTCTATCATCACACTCCTTAATGCAGTTGGAACTCCAAGgtaaacattttaagttggcaaaacttggtaaagaaggttttcttttgttcatttgttattgtgagtaacttgtgtacatcttatgcag-------------
| || ||||||||| | || || ||||||||||| |||| |||||| ||||| ||||| ||||||| ||| || || || |||||||||||||||||||||||    ||      | | |||  ||  | |  |   | || ||  ||  |||| |  | ||    ||  | |   |     | | |              
TCCCTGCAACTGTTTTTTTCCCTGAAGTGGAAGTTCCCATGTGGGGAGCTGTCTATATTCCTTCTACCATTACTCTTCTGAATGCAGTTGGAACTCCAAGgtagcttttcctctctaggaaatatttcttattatcctgtt-ttccgtggatttatgttggtttcaaaactataatcccaccaagaacatgcccagatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320924|gb|GR827373.1|GR827373
EST:     GTGTATATACCTTCTATCATCACACTCCTTAATGCAGTTGGAACTCCAAG                         GTCAATCCACTTGCTGGTATTCTGGATACTCTTTGAAAATGTTATGTCAAT
genomic: GTGTATATACCTTCTATCATCACACTCCTTAATGCAGTTGGAACTCCAAGgtaaacattt ... tcttatgcagGTCAATCCACTTGCTGGTATTCTGGATACTCTTTGAAAATGTTATGTCAAT
EST: gi|254320925|gb|GR827374.1|GR827374
EST:     TGTATATACCTTTCTATCATCACACTCCTTAATGCAGTTGGAACTCCAAG                         GTCAATCCACTTGCTGGTATTCTGGATACTCTTTGAAAATGTTATGTCAAT
genomic: TGTATATACC-TTCTATCATCACACTCCTTAATGCAGTTGGAACTCCAAGgtaaacattt ... tcttatgcagGTCAATCCACTTGCTGGTATTCTGGATACTCTTTGAAAATGTTATGTCAAT