Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGAAGCCAAGGATTTACTGGGGGATGATTGGGTACAACGACATAGGAGGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGCTTGGGCAAAGgtgttgttctagtaactttgctgactgttgtcttgcagcttagatgtcacttggatattttgttattaatgataaaggcatctgagtagattggtttaaa...
Basic information
species | Glycine max |
transcript | GLYMA10G34000.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G03540.1 (Arabidopsis thaliana), 5'ss of exon 9
GTCTGAAGCCAAGGATTTACTGGGGGATGATTGGGTACAACGACATAGGAGGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGCTTGGGCAAAGgtgttgttctagtaactttgctgactgttgtcttgcagc-ttagatgtcacttggatattttgttattaatgataaaggcatctgagtagattggtttaaa
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GTCAGAAGCCAAGGATTTGTTAGGCGATGATTGGGTTCAAAGACATAGGCGTATCGTGCAGCAACATGCAAACCAATACAAAAGAGTTGCCTGGACAAAGgttctgt-ctatttgtctaact--ctgtaaagaaacactattatataaaatttcattaaattgttactaa-gaaactgttacatattttg--tag------
upper sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 9
GTCTGAAGCCAAGGATTTACTGGGGGATGATTGGGTACAACGACATAGGAGGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGCTTGGGCAAAGgtgttgttctagtaactttgctgactgttgtcttgcagcttagatgtcacttggatattttgttattaatgataaaggcatctgagtagattggtttaaa
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GTCTGAAGCCAAAGATTTATTAGGGGATGATTGGGTGCAAAGACATCGAAGGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctgacccaattgaatgaaatcagtagaggagtgctctaaggaattgtattttttatttttattttattttttatgagaaacaaaaaaggtattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151397587|gb|EV267460.1|EV267460EST: GGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGCTTGGGCAAAG ATTCTTCAGTGCCTATCTATTCAGGGCCTTACTTCATCTGGTGGTGGGAGT
genomic: GGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGCTTGGGCAAAGgtgttgttct ... tccttggcagATTCTTCAGTGCCTATCTATTCAGGGCCTTACTTCATCTGGTGGTGGGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGAAGCCAAGGATTTACTGGGGGATGATTGGGTACAACGACATAGGAGGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGCTTGGGCAAAGgtgttgttctagtaactttgctgactgttgtcttgcagcttagatgtcacttggatattttgttattaatgataaaggcatctgagtagattggtttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG