1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTGTGGAAGAAGCCCAGAGAGCCATTAACGCTGCACATGTGGAGGTTGAAAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagtagtttcttctctttttgtattgcaattctaattttctaaataattttattcaatgaaatgacaaaaaatgggagctttttcctatgaatgaaatattggtattagatctttaagcatcatatttctcttttcagagatatactttacaagcttccatatgcag
species | Glycine max |
transcript | GLYMA10G33820.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTG GTTTCATTGCAATGTATGCAACATTGGCAAGTCGAGATGTGEST: gi|6567074|gb|AW234701.1|AW234701
genomic: AAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagta ... ccatatgcagGTTTCATTGCAATGTATGCAACATTGGCAAGTCGAGATGTG
EST: AAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTG GTTTCATTGCAATGTATGCAACATTGGCAAGTCGAGATGTGEST: gi|208306520|gb|GE104459.1|GE104459
genomic: AAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagta ... ccatatgcagGTTTCATTGCAATGTATGCAACATTGGCAAGTCGAGATGTG
EST: AAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTG GTTTCATTGCAATGTATAGAACAACATTGGCAA
genomic: AAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagta ... ccatatgcagGTTTCATTGCAATGTAT-G--CAACATTGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTGGAAGAAGCCCAGAGAGCCATTAACGCTGCACATGTGGAGGTTGAAAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagtagtttcttctctttttgtattgcaattctaattttctaaataattttattcaatgaaatgacaaaaaatgggagctttttcctatgaatgaaatattggtattagatctttaagcatcatatttctcttttcagagatatactttacaagcttccatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT