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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCAAAAGATTTAAATCATATTGATGTCCTTACAAAGAGgtatcaatgctgggtaatttcctattttaatcatggaagcacctttttgtagaattacaaattgtttctttttttaagccagagacttttctgtactact...

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 9
AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCAAAAGATTTAAATCATATTGATGTCCTTACAAAGAGgtatcaatgctgggtaatttcctattttaatcatggaagcacctttttgtagaattacaaattgtttcttt----ttttaagccagagacttttctgtactact-----------------------------------------
| ||| | || || ||||| |||  |||||| |||||||| || |   |||| ||        | |||||||| |||||||||||  ||||||||||||||||  | |  | |  || ||   ||  ||   ||  |   |   |      ||| | |   ||   |   |    | ||||   |    | | |  ||  | |                                          
AAAGACTTCTGCTCATGTCCGATACTCCAAGGAAACAGATGGACAAGCTAGCTGAGGCGTACTCCAAAGATTTTAATCATATTGACATCCTTACAAAGAGgtaa-agtagttgacaacttgacatgctagctattaagcgaaagtgaacctgaaatgctgcttaggttcatgccatattaattaatgatcatcttggttttgcatatatagtttcagttctgatataatgtccctaccagtgcag

upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 9
AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCAAAAGATTTAAATCATATTGATGTCCTTACAAAGAGgtatcaatgctgggtaatttcctattttaatcatggaagcacctttttgtagaattacaaattgtttctttttt-taagccagagacttttctgtactact
| ||||| |||||| | |||||||||||||| || ||||| || |   | || ||||||||||| |||||  | |  |||||||||||||| ||||||||||||   |  | | |  || | | |  ||||||  | || |||||   | | | |  |||||| | | |  |    ||  | || | | || | |    | 
AAAGAATTCTTCTTCTTTCTGATCTTCCAAGGAAGCAGATGGACAAGCTGGCTGACAATATTGCCAAAGACCTTAGCCATATTGATGTCCTAACAAAGAGgtatagttaatagattcttccttttgctaatcagagcagtaccttccaggaaagtctcaaattatctttcctgcacaatgctgaaaatcttttatttgtc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481623|gb|AW200894.1|AW200894
EST:     GCAGACAATATTGCAAAAGATTTAAATCATATTGATGTTCTTACCAAGAG                         TTGCAGCCTTAATATGACCAAATCATTTGAAAGAGCAGCAGCTAACAGGGC
genomic: GCAGACAATATTGCAAAAGATTTAAATCATATTGATGTCCTTACAAAGAGgtatcaatgc ... ggctttacagTTGCAGCCTTAATATGACCAAATCATTTGAAAGAGCAGCAGCTAACAGGGC