Sequence
atgc intronic sequence ATGC exonic sequenceAGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgtatttatttctcattcattatccatttcattcgttagtttctttttctgaaaggagttaacagattagttgctcaaggatggtgctttgtgaaattatg...
Basic information
species | Glycine max |
transcript | GLYMA10G30930.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 9
AGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgtatttatttctcatt--cattatccatttcattcgttagtttctttt--tctgaaaggagttaacagattagttgctcaaggatggtgctttgtgaaattatg
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AATTCACAAGCATGACAGAAGGAAAGATGGGTTATGAAGATTTTGTTTACTTTATTTTGTCTGAGGAAGACAAATCATCCGAGCCTAGCCTTGAATACTGgtaagtatgttctattagcgtagataattgtccttggtaggcactcgtagtttttatcttctatatgcatttgtatattctgtct--cacttagcttgatta--
upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 9
AGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgtatttatttctcattcattatccatttcattcgttagtttctttttctgaaaggagttaacagattagttgctcaaggatggtgctttgtgaaattatg---
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AATTCACAAGCATGACAGAAGGAAAGATGGGTTATGAAGACTTTGTTTACTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggtagctgtgttctgaatagtt-gtatgt--attttttttgtagaactgttccttttttcttaatgtgataagataattccaccttacagtttataa
upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 9
AGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgtatttatttctcat-tcattatccatttcattcgttagtttct---ttttctgaaaggagttaacagattagttgctcaaggatggtgctttgtgaaattatg
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AGTTTACTAGTAAAACCGAAGGAAAGATGGGTTATGAGGATTTTGTTTACTTCATATTGGCTGAAGAAGACAAGTCATCAGAACCTAGTCTTGAGTATTGgtgagaatggtgaatgttttcatacatatagagtctttgtgtcggtgttatttggtaagagcta--tattctgttattaatgtttgatgatatag---------
upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 9
AGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgtatttatttct---cattcattatccatttcat---tcgttagtttctttttc-tgaaaggagttaacagat-tagttgctc---------aaggatggtgct--ttgtgaaattatg----------------------------------------------------------------
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GATTCACCAGCAAAGTTAAGGGAAAGATGGGTTATGAAGACTTTGTGTGGTTTATACTTTCAGAAGAGGACAAATCTTCAGAACCCAGCTTAGAGTACTGgtatgcatctttatacaacccgcatacatgttctgtatctttagtcatggtttcatgaattcagtttttttctatctccgctctcaattgaaaaagaagatatcgctggtagtaccagagcatgaggattgcggagaaaaaccaagatacaatctaattgatgtttatgcatacctgctgcag
upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S191_94V6.1 (Physcomitrella patens), 5'ss of exon 10
AGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgta-----tttatttctcattcattatcc---atttcattcgttagtttctttttctga---------aaggagttaac----------agattagttgctcaaggatggtgctttgtgaaat---tatg--------------------------------------
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GGTTCAAAAGCAAAGTTGAAGGAAAAATGGGATATGAGGATTTTGTGTGGTTTATATTATCAGAAGAAGATAAAACATCTGAGACTAGCCTTGACTATTGgtaatttttttgtttttttcttattctttttaattttatttattaatttatttattttattatctcccatgtagttatttctttttacaagcttgaattcttaaacatgat-cattgtgatatatctatatttaatgattatctaacaagtggtgaaaataaaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58019797|gb|CX706539.1|CX706539EST: TCTTGAGTACTG GTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCT-ACNAAGGAATGAAC
genomic: TCTTGAGTACTGgtatttattt ... tcactattagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTAAC-AAGGAATGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTTACCAGCAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTTCATACTATCAGAAGAGGATAAATCATCTGAACCAAGTCTTGAGTACTGgtatttatttctcattcattatccatttcattcgttagtttctttttctgaaaggagttaacagattagttgctcaaggatggtgctttgtgaaattatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT