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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgtaagttgtaaagaattttagtaatgttttatggatgctgtcaacatttgtcgttgacatgatgctgatgtatctacatctgttgcag

Basic information

species Glycine max
transcript GLYMA10G30020.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 7
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgtaagt----tgtaa----agaattttagtaatgtttta----tggatgctgtcaac-------atttgtcgttgaca---tgatgctgatgtatctacatctgttgcag
||| || || |||||||| ||| || |||||||| | ||||| ||| |||| ||||||||||||||||||||     ||||     || ||  ||   ||  |  |    ||     ||||| |       | ||||  | || |   ||||  | |  | | |   | ||| ||||
GCATTCCACTGATCGTGAAGTTTCTATTATGATGCTCATGGCTTACTTGTCTTACATGCTTGCTGAAgtaagcaccctgtactattagcatcatatagatcctgcagatttgagcaatgtcagctaaatttaattgtaatggataatctgatattaacctgtttctttttgtggcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 6
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgta-agttgtaaagaattttagtaatg--ttttatggatgctgtcaacatttgtcgttgacatgatgctgat-gtatctacatctgttgcag
||| || || || ||||||||||| ||||||||| | ||||| ||||| ||||||||||| || || ||  |  | | |  |  | | | || |   || | |  || ||||    ||  ||  | |  |||  ||| |  ||| ||   |  ||||||
GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctctgatcagatgtggcaagggaattcacgcttgttgtc----ttactctcttaactgactctgttcatatatatggcatttgcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgtaag--ttgtaaagaattttagtaatgttttatggatgctgtcaacatttgtcgttga---catgatgctgatgtatctacatctgttgcag---------------------------------------------
||||||||| ||||| |||||||| ||||||||| | ||||||||||| |||||||| ||||||||||||||  || |    | || | |     ||   |||   ||||   |  ||| | ||||       ||   |||  | |   |  | |  ||                                              
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601836|gb|BQ612167.1|BQ612167
EST:     AGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAA                         TTATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATG
genomic: AGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgtaagttgta ... tctgttgcagTTATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATG
EST: gi|254323350|gb|GR835851.1|GR835851
EST:     AGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAA                         TTATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGG
genomic: AGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgtaagttgta ... tctgttgcagTTATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGG