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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggggaagcacttgttttttatattcccaagtaggttaatatgatctcataattttttttccttgcaagatataaattatttctccctggtctgcag

Basic information

species Glycine max
transcript GLYMA10G29000.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg-----aagcacttgttttttatattcccaagtag-gttaatatgatc----tcataattttttttccttgcaagatataaattatttctccctggtctgcag------
|| |||| |||||||| ||||  || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||   ||||| |||||||||||||            ||||  ||| | |  |     | | |  |  ||||| | |    ||||| |||  | |          |   | ||  |  |   |||| ||         
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag

upper sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtat--------ggggggaagcacttgttttttatattcccaagtaggt-taatatgatctcataattttttttccttgcaagatataaattatttctccctggtct-gcag--
||||| |  | ||||||||||  || ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||        |    |  |||||   ||||    |   ||  |  ||  |||   | || ||  | | |   | ||| | |  ||  |  | |  |   | |||| |||   
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaa-cttatg-tatgtcacctttgaacggaatttagaactcatgttttgtcttgcatag

upper sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggg---gaagcact----tgttttttatattcccaagtaggttaatatg-atctcataattttttttccttgcaagatataaattatttctccctggtct-gcag---
||||| |  | |||||||||   || ||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||||||        ||   |||    || |||||   ||    ||| |  |   ||| | || ||   | | |    | | |    ||  |  | |  |     |||| |||    
CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaacataatttagaactcatgttgcgtcttgcaatag

upper sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggg---gggaagcacttgttttttatattcccaagtaggttaatatgatctcataattttttttccttgcaagatataaattatttctccctggtctgcag
|  | ||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||     |  |   | || || ||   ||  |  || ||  |    || |||      | ||| | | |||| | | |  ||| | | | |   |    |||
CCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAgtatgatcttgatagaaatttcttgttctcatgtcttagcagtct----tgttct-----gtgtttctgcatgcatgttttttattctctttgct--gatgacag

upper sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ31557 (Selaginella moellendorffii), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggggaa-gcacttgttttttatattcccaagtaggttaatatgatctcataattttttttccttgcaagatataaattatttctccctggtctgcag
|| | ||  | || |||   || || |||||||| || |||||||| || || |||||||| || ||||| || || || ||| | ||||||||||||||||| |  |  || || ||       | |||  |  | |  |   |                                                          
CTCTCGTGGAACTTCTTGCCAACGCAGAGTTTGACATAAAGAAAGAGGCAGCGTGGGCTATTTCCAATGCAACCTCTGGCGGTACACATGAACAAATCAAgtaggttgtcaatgcgctgagacgctgtat--ctgactctggagacgcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346432|gb|BM891312.1|BM891312
EST:     GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: gi|298166384|gb|HO010963.1|HO010963
EST:     GCTTGGGCTATCTCGAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTATGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: gi|120492247|gb|EH220414.1|EH220414
EST:     CATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
genomic: CATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: gi|298172729|gb|HO019769.1|HO019769
EST:     GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: gi|192301983|gb|FG995153.1|FG995153
EST:     GGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
genomic: GGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG