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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagcttacctaaatttgtcagctcatgcacaatatacatatttatcattgccccggcatgctctctctagctattcagtagatatctgcttaaacgttttttttttctggtcctccaaatcgaagtttcaagtaaagagccaatgcttgcagtgctgtttctcattctgtgattacttgttttatgtag

Basic information

species Glycine max
transcript GLYMA10G07820.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07820.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G084881_T02 (Zea mays), 5'ss of exon 1
TGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagcttacctaaatttgtcagctcatgcacaatatacatatttatcattgccccggcatgctctctctagctattcagtagatatctgcttaaacgttttttttttctggtcctccaaatcgaagtttcaagtaaagagccaatgcttgcagtgctgtttctcattctgtgattacttgttttatgtag
  |||||||||| ||||| |||||||||||  | |||  ||| ||||| ||||| ||||||||||| |||||| | || || || || |||||||| |||||  || |||  |||   ||  ||   | |    || | | |  |||||   |        | |     || || |  |  |  | |  ||   | || |    |                                                                                         
CATTGGTGATGTGGCTACCTTCCCTTTGAAGATGTACAATGAGTTGAGGAGAGTGGAACATGTTGACCATTCTAGAAAGTCTGCAGAGCAGGCTGTAAAGgt--gtggctatcctttgtt-atctattgactt-cactcttccaatttagtgtctgtagttcgtaaagcctttaacc-tggatcaaaattcccttcaagcaccct-----------------------------------------------------------------------------------------

upper sequence: GLYMA10G07820.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G52880.1 (Arabidopsis thaliana), 5'ss of exon 9
TGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagta--gcttacc-taaatttgtcagctcatgcacaatatacatatttatcattgccccggcatgctct-ctctagctattcagtagatatctgcttaaacgttttttttttctggtcctccaaatcgaagtttcaagtaaagagccaatgcttgcagtgctgtttctcattctgtgattacttgttttatgtag
||||||||| ||||||||||||||||||||| | ||||| ||  ||||||| || || |||||||| ||||| |||||||| || || || ||||| ||||||| ||  ||||||  ||    ||  | | | | ||| | |  | |||| |||  | ||     |    |  | | | || || ||         || ||||  || |   ||      | | ||  |  |  | ||   | ||| |   ||   ||   | |  | |  ||                         
TGTTGGTGACGTTGCTACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAGGGTCGAGCATGTTGACCATTCCCGCAAATCAGCAGAGCAAGCTGTTAAGgtaaataatgcttacaatatggctgatatcgc-tacaccaaaaccctattaatccataccataaaaaatgcaacgcaaactcttgag---------gcctaaatcttatagatt----aacatacagttgtatatatctgatgaagcgtttatatatgtgatacattgtggcag------------------------

upper sequence: GLYMA10G07820.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 5'ss of exon 9
TGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagcttacctaaatttgtcagctcatgcacaatatacatatttatcattgccccggcatgctctctctagctattcagtagatatctgcttaaacgttttttttttctggtcctccaaatcgaagtttcaagtaaagagccaatgcttgcagtgctgtttctcattctgtgattacttgttttatgtag
||| || |||||||||||||||||  ||||||| |||  |||| | ||||||||||||||||| || ||| | || ||||| ||||| || ||||| |||||| |   |||  ||  ||      ||| |   ||  | ||   |   ||| | |    |   || |   ||| |||| |  |  ||  |   |  |||    || || |                                                                                    
TGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAACATGTCGACCATGCCCGGAAATCAGCTGAGCAAGCTGTCAAGgtatgcgacttttctttat------gcttagttact-tttatgaacc-atcttagt--tgatttgtttaatct-gctaattgggtgaagttaccaaaaatacattgttctg-----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934838|gb|BQ079868.1|BQ079868
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|15664093|gb|BI701464.1|BI701464
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|209707197|gb|BW656815.1|BW656815
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|19934513|gb|BQ079543.1|BQ079543
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|254344725|gb|GR851315.1|GR851315
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|21255678|gb|BQ452566.1|BQ452566
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|4293330|gb|AI442032.1|AI442032
EST:     AGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACA-GCTTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCT
genomic: AGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGC-TGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCT
EST: gi|192295928|gb|FG992679.1|FG992679
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|13790041|gb|BG652632.1|BG652632
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|5666892|gb|AI930928.1|AI930928
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|21677236|gb|BQ629587.1|BQ629587
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|192295927|gb|FG992678.1|FG992678
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|19934839|gb|BQ079869.1|BQ079869
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|209697685|gb|BW655586.1|BW655586
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|254331131|gb|GR843250.1|GR843250
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|192327630|gb|FK021307.1|FK021307
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|209701294|gb|BW653037.1|BW653037
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|254331132|gb|GR843251.1|GR843251
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|6913394|gb|AW394924.1|AW394924
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|254344724|gb|GR851314.1|GR851314
EST:     AGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAG-AGTATGATTACCT
genomic: AGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAA-Ggtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCT
EST: gi|151409737|gb|EV279545.1|EV279545
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
EST: gi|9204276|gb|BE330500.1|BE330500
EST:     GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAG                         GCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT
genomic: GAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGgtaagtagct ... ttttatgtagGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTT