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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcag

Basic information

species Glycine max
transcript GLYMA10G06580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g43750.1 (Oryza sativa), 5'ss of exon 9
ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatccttctttgttaaat--ttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcag----------------------------------------------------------------------------------------------------
 | || |||||||||||||||||||||||||||||||| |||||    | ||| |  || || | ||| |||| || |      |    || ||  ||     ||  || ||  |||||      | ||   ||  ||||      | |||                                                                                                    
GTGTTTATGATGAACCTTTCTGCTCCCTTTATATGTGAATTCTTCCGTGATGCCCAAGAGAAGGCTCTTCCgtgagtactgggttccactatatgcttattataaataactttgacatagaacattcaacgttg--cattaacaactgcagcacattattcttctaaacccatgcacttcatccatgttagaatttttccaatacagtgctatgtaaaacaggattaaagttcttttgatcaccaaactag

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G089767_T01 (Zea mays), 5'ss of exon 7
ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcag----------------------------
 | || ||||||||||||||||||||||||||||| ||| | ||    | ||| |  || |||| ||| ||||||| |     ||    |  || || |     ||  |      | | ||    |    | | |||| | | | |  |                            
GTGTTTATGATGAACCTTTCTGCTCCCTTTATATGCGAGGTTTTCCGTGATGCCCAAGAGAAAGCTCTTCCgtaagta-----ctgcactggatctggatgtgtaacttctcttttctagagtgcagatgtat-cattgtagtaataggagaaagaagtttttttaaatcctaaaag

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 9
ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcag----
 | ||| |||||||||| ||||||||||| || |||||||||||    | ||| |  || || || || |||||||  |  |  | ||| | |      ||     | |  |  | |||    | ||   ||  |||   |  | ||||    
GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCgtgatgcccaagagaaggtcctcccgtaagtcttatattctgtaacac-----gatgctcagtgttttaaatttcattcaaggctg--catatagcaactcagtgaa

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G540538_T01 (Zea mays), 5'ss of exon 9
ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatccttctttgttaaat----ttgaagaaagaaaattatacatattgatcttaataatg-ttcattctgggattcag-----------------
 | ||| |||||||||| ||||||||||| || |||||||||||    | ||| |  || || || || |||||||  |  |  | ||| | |      | |       |||||  |   |  | |    |||     ||| |     |                      
GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtcttatattctgtaacacgatgctcagtgttttaaatttcattcaaggctgcatatagcaactcagtgaaaaacatgaaagcacttgtcccagtc

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 9
ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcag
 ||||||||||||||||||||||||| || || ||||| ||||| |||| |  || ||| |||| ||| |||||||     | |    ||   |||  |  |     ||| |        ||   || | || |  ||   ||||  ||
GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACCgtaagctctatgcccccttttttttttatca----tattcttagctaaaattgcaaaactgatactttctggataaag

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 9
ATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggat-------ccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcag
 ||||||||||||||||||||||||| || || ||||| ||||| |||| |  || ||| |||| ||| |||||||          | || ||| |||  |||      |  | ||| |        ||   || | || |  ||   ||||  ||
GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACCgtaagctctatgccccttttttttttatttttttttttatcatattcttagctaaaattgcaaaactgatactttctggataaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024551|gb|CX711292.1|CX711292
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: gi|298169113|gb|HO020473.1|HO020473
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAAAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: gi|12689938|gb|BG156274.1|BG156274
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: gi|193336544|gb|FK299032.1|FK299032
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: gi|12690012|gb|BG156348.1|BG156348
EST:     CTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGGACAAA-TTCTGCC                         CTATTATGGATTATGTTTNTGGAA-TGAAACTGAAGCAAGACCATTTTCTA
genomic: CTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGG-ACAAAGTTCTGCCgtaaggatcc ... tgggattcagATAT-ATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTA
EST: gi|151394548|gb|EV264419.1|EV264419
EST:     TCCCTTTATATGTGAGTTCTTTAAAGGGTGCACTGGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: TCCCTTTATATGTGAGTTCTTTAA-GGGTGCACTGG-ACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: gi|22525420|gb|BU084231.1|BU084231
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: gi|120531830|gb|EH259963.1|EH259963
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTCTTTGGAAATGAAACTGAAGCAAGAACCATTT-CTA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAAC-ATTTTCTA
EST: gi|16348521|gb|BI974116.1|BI974116
EST:     GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC                         ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA