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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCCATTCTATGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtttgcatcctggactcatatttctgacgattagtatattttatttatttatttcttctttgtgaccaactaaatgcctatgcaaactaacag

Basic information

species Glycine max
transcript GLYMA10G05320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g38710.1 (Oryza sativa), 5'ss of exon 9
TAATCCATTCTATGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtttgcatcctggactcatatttctgacgattagt-atattttatttat-ttatttcttctttgtgaccaactaaatgcctatgcaaactaacag
 |||||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| || || || ||||| ||||| |||||||| ||||| ||     |  |||  |     | |   ||||| ||    |  || | || |  ||| |||     || |    ||    ||||         
CAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccattacactagt-----taaaagttagtgatgccatgcttgtattgtgccttttttaaagtcatcc---tgtgcgtgcag--------

upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 9
TAATCCATTCTATGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtttgcatcctggactcatatttctgacgattagtatattttatttatttatttcttctttgtgaccaactaaatgcctatgcaaactaacag----
 || || |||||||| |||||||| |||||||| |||||||| || |||||||||||  | |||||||| ||||| || ||||| || |||||||| |||||   ||   |   ||   || |   | |  | || | |||| ||| || |  | |  |  ||||     | |  | || ||  ||  ||  |    
CAACCCGTTCTATGCCGGATTTGGAAATAGAGACACAGATGAGCTGAGTTACAGAAAACTCGGAATCCCAAAGGGAAAGATATTCATAATCAACCCAAAGgtactcacaatcttctagaatctgacatgcatggt-tgttttgtttcttcacgtgtattgagtga-----tgagagtctctgttaaaaaatggctag

upper sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
TAATCCATTCTATGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtttgcatcctggactcatatttctgacgat-tagtatattttatttatttatttcttctttgtgaccaactaaatgcctatgcaaact-aacag
 ||||||||||||||||| ||||| |||||||| |||||||| || ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||       ||  ||  |||||| | | |   ||  ||  |    |||        || |   |||       |||    ||   ||||  ||||
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgt------acttcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttga-------aattttcatttgaacttgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208248279|gb|GE044476.1|GE044476
EST:     CAAAATATTTATTATCAACCCTAAG                         GGTGAGGTAGCTATTAGTCAGCGTATCGGCGCAAAGTCGTATACATCATTA
genomic: CAAAATATTTATTATCAACCCTAAGgtttgcatcc ... aaactaacagGGTGAGGTAGCTATTAGTCAGCGTATCGGCGCAAAGTCGTATACATCATTA
EST: gi|9205421|gb|BE331645.1|BE331645
EST:     AATCCCGAACGGCCAAATATTTATTATCAACCCTAAG                         GGTGAGGTAGCTATTAGTCAGCGTATCGGCGCAAAGTCGTATACATCATTA
genomic: AATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtttgcatcc ... aaactaacagGGTGAGGTAGCTATTAGTCAGCGTATCGGCGCAAAGTCGTATACATCATTA