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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAATTGCATGGGGGTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgttttatagtttggattgctccctattatgttattgctagttacactattatgatcaatatgattgttcttatgtgttcctttatcagatcaatt...

Basic information

species Glycine max
transcript GLYMA10G04480.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g40830.1 (Oryza sativa), 5'ss of exon 9
TGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAATTGCATGGGGGTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgta--atgttttatagtttggattgctccctattatgttattgctagttacactattatgatcaatatgattgttcttatgtgttcctttatcagatcaatt-
 || ||||| || |||||||| |||||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||| | ||| || ||    ||||||  ||    |     ||   ||  |  |||  || | || |  | |  | | | || |     | |  ||   |     | ||||     ||  ||  |  
CGGTGCAGGATTGGCAATGGCTACAATGGACATCATTAAGTTGCATGGGGGTACGCCTGCCAATTTTCTTGATGTTGGTGGAAGTGCATCAGAGGGACAGgtataataagctgagaattctttttgtaactaccatctcat-gtgaatcgcgccactaaggctg-tgttcttcccccc-cattttcccaatccacctctctcg

upper sequence: GLYMA10G04480.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G064695_T01 (Zea mays), 5'ss of exon 9
TGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAATTGCATGGGGGTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaa-----------tgttttatagtt--tggattgctc--cctattatgttattgctag----ttacactattatgat----caatatgattgttcttatgtg----ttcctttatcag-atcaatt------------------------
||||||||| || || ||||| || |||||||| || || |||||||| ||||| || ||||||||||| ||||| ||||| | ||| || ||    ||||||             ||||||  |||  | || || |   |||  | | |   || ||     | || | ||| |||      |   | |||   |  | | |    | |||||  |||     ||                         
TGGAGCAGGATTGGCCATGGCGACCATGGATATTATAAAGTTGCATGGTGGTACGCCCGCCAATTTTCTTGATGTCGGTGGAAGTGCATCAGAGGGGCAGgtataaattggttgccgttttagcgttacttgaatgtttgaccttctctatccatgttaaaccctgacgccattttgacattgtagcttaatttgccgcaggcgcatatgcctttgacagtgcttatcttgtaaaatttctattctatccag

upper sequence: GLYMA10G04480.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0005g03790.t01 (Vitis vinifera), 5'ss of exon 9
TGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAATTGCATGGGGGTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgttt-tatagtttggattgctccctattatgttattgctagttacactattat-gatcaatatgattgttcttatgtgttcctttatcagatcaatt
||| || || ||||||||||| || ||||||||||| ||  | |||||||| ||||||||||||||||| ||||| || || ||||| |||||||  |||||||||    | | | ||    |||    ||||  |  ||||    |   | | |  | ||    | |  |  || |  | | |||| | || | ||   ||
TGGTGCTGGCTTAGCAATGGCTACCATGGATATAATCAAGCTACATGGGGGAACTCCTGCCAATTTTCTAGATGTTGGAGGAAATGCTTCTGAAAGTCAGgtaatgcgaattttgcttctgatgcata-tatttaggcattggctttcttattgtagtagaatccttttctaattttggtttattccat-atgatatttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193672162|gb|FK617566.1|FK617566
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|192311647|gb|FK004866.1|FK004866
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTT-AAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|192308760|gb|FG999785.1|FG999785
EST:     CAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: CAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|254325002|gb|GR834427.1|GR834427
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|298179372|gb|HO027843.1|HO027843
EST:     GTACTCCTGTCAATTTTCTGGATGTAGGTGGCGATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|7326644|gb|AW620442.1|AW620442
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|51336677|gb|CO980543.1|CO980543
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|151406201|gb|EV276016.1|EV276016
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|6727069|gb|AW311423.1|AW311423
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|12689320|gb|BG155656.1|BG155656
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAG                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT
EST: gi|22523849|gb|BU082660.1|BU082660
EST:     GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAC                         GTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGCGAAGGCAATT
genomic: GTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGgtaatgtttt ... tgtaaatcagGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATT