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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCCGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaatgattctcagcttgtgtctttaattgataacttgtctataaaatcctgcatttgatgatttaagtggtaatgactaataaaatacatcaac...

Basic information

species Glycine max
transcript GLYMA10G03740.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03740.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 9
TGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCCGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaatgattctcagcttgtgtctttaattgataacttgtctataaaatcctgcatttgatgatttaagtggtaatga-ctaataaaatacatcaac
 ||||||||||||||||| || || ||||| | ||| || |||||  |||| || |||||||| |||||| ||||||||||||| ||     |  | |||||  ||    ||        || | ||  | ||| || | | | ||      |  |||| |     |||||||  || |||| | | | |  |   | || 
AGACTTTGATGCCACTGTGGGAATCCACCCTACTGCAGCAGAGGAGCTTGTCACAATGAGGACTCCTACTCGGAAGATTCGAAACAGCTCTCCACCCGAGgtttgtgtcagacagaatctttttatcggttatttatca-tagacttagtcctgttgcactgacctatttaagaagtgatgaaccactgacctgtttaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342973|gb|BI968568.1|BI968568
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|11411574|gb|BF423585.1|BF423585
EST:     GAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: GAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|23064089|gb|BU578862.1|BU578862
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGATTGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|192295550|gb|FG988124.1|FG988124
EST:     AAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: AAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|209705614|gb|BW673583.1|BW673583
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCATCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|209725780|gb|BW659911.1|BW659911
EST:     TAGGAAGATTCGAAAGAGTGAATCATCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|209698024|gb|BW675643.1|BW675643
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCATCTGAN                         GGAAAGTCTGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|22927402|gb|BU544541.1|BU544541
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|8825678|gb|BE209471.1|BE209471
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: gi|192322570|gb|FK014691.1|FK014691
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCCGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaatgattctcagcttgtgtctttaattgataacttgtctataaaatcctgcatttgatgatttaagtggtaatgactaataaaatacatcaac

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