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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttgctataactttttcccaccttatatttaatgtgtcatgtgttatttcattacaccagcttcattcattgaacttgcttcacatgcagcaaaacattggcttgcagtgtgttaatattctccttttgcag

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 9
GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttgctataactttttcccaccttatatttaatgtgtcatgtgttatttcattacaccagcttcattcattgaacttgcttcacatgcagcaaaacattggcttgcagtgtgttaatattctccttttgcag
 ||||||||||| ||||| || ||||| |||||||||||||| || || ||||| || ||||| || |||||||| || |||||| ||  |  |             |  |||| |||    || |    || ||  ||||  ||  |  |  ||  ||| ||| | |   |  ||||     ||||   |   | | | ||||              
ATTTGATGCCAAAATAGCTGCTGCAGTGGCTGAGGAAACAAACCTACCCTTTGTGACAGCAGAGAACAAGTTTGAAGCTTTGgttagtaacagtg------------cacatatataa---atcttactctaatttgttactgca--tatagacaaggaatttgttac-tgtttagcag----ttggaagggcatttttgaata--------------

upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 9
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttgctataactttttcccaccttatatttaatgtgtcatgtgttatttcattacaccagcttcattcattgaacttgcttcacatgcagcaaaacattggcttgcagtgtgttaatattct-ccttttgcag
||||||||  |||||||| || ||||||||||| ||||||||  |||| ||||| || |||||||| |||||||| ||  ||||  |   | | ||||   ||     |  |||||| ||   |       ||| |  ||   | || ||  |  |   |  |     | |||   | ||||  ||   |    ||    | |||||| | |||| |||
GTTTGATGTAAAGATAGCTGCTGCAGTAGCTGAAGAAACAAACTTGCCATTTGTCACTGCAGAAAACAAGTTTGAAGCTCTGgta-gcctcca-aactacctc-----tattatttattgacacgaaacccattcc--tagctctgcctc--tggtgccaactagacaagatgttcctaaacggtgaaatcagttgctaaattattctgctttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207780421|gb|GD750774.1|GD750774
EST:     AGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG                         GCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCG
genomic: AGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttgct ... ccttttgcagGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCG