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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcatttttcctctattatattatctgtgctttagtacatacattgccctatcgctattattttctttatttctatttgcttatttatggatacag

Basic information

species Glycine max
transcript GLYMA10G00610.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00610.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 9
GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcatttttcct-ctattatattatctgtgctttagtacatacat------tgccctatcgctattattttctttatttctatttgcttatttatggatacag-------------------
|| |||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||  | ||||| |  |||||||  ||| || |  |  | ||   |   ||||||| |||  | ||         || | | || | || || ||  ||| | |||   ||||| ||  | |                     
GATCTGGTGGAAAACAATCCCCTTATTGCGGTTGAAGTTCTCATTAAGTTGATTAATTCAGCTGAAATTGAGGAgtatgtttttgtcatgttgatttacctttcttgctttattactgaaatgataagcatcccagcactttaatctttttcttttttttttctgtatttttgctttcctttcttttttgtcaatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31474652|gb|CD416680.1|CD416680
EST:     ATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|10232329|gb|BE801217.1|BE801217
EST:     ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|8403273|gb|BE058907.1|BE058907
EST:     ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTG
genomic: ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTG
EST: gi|16344608|gb|BI970203.1|BI970203
EST:     ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTNNNAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|26057582|gb|CA800496.1|CA800496
EST:     ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|214009017|gb|DB987096.1|DB987096
EST:     CAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: CAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|14008705|gb|BG725309.1|BG725309
EST:     ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|151393880|gb|EV263751.1|EV263751
EST:     ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|9900317|gb|BE609285.1|BE609285
EST:     TTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: TTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattt ... atggatacagATACTTCACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT