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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgattactttcttccatcaaatgttctaataggtcattttataacacgtgcccacaagaatatatatttgcag

Basic information

species Glycine max
transcript GLYMA10G00530.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 17
GGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgatt--actttcttccatcaaatgttctaataggtcattttataacacgtgcccacaagaatatatatttgcag
||||||||| |||||||| ||||| ||||||||||| || |||||||||||||| || || ||||| |||     ||  | ||||||   ||| || || |    |  || ||||| |    ||||      ||| | |  ||  ||
GGATGGTGTCAGTGAAGGCCAATTCTACCAAGTTCTCCTCTATGAGTTGGATGCTATCCGCAAGgttagatgcatttgtattttctttactcagatatttt----gtccactttattaggt-tgcctgacgaaatgttttcttttag

upper sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
GGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgattactttcttccatcaaatgttctaataggtcattttataacacgtgcc-cacaa--gaatatatatttgcag--------
 ||||| ||||| ||||||||||| || |||||| |||| |||||||||||||||||||| ||||| | || |  ||  |   |  ||| |||||            | ||   || || |    || ||  | | |    ||||           
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaact--tttgtgcatagcatgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag

upper sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 15
GGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcag----aattgattactttcttccatcaaatgttctaat---aggtcattttataacacgtg----cccacaaga----atatatatttgcag-----
||||||||| ||||||||||||||||| ||||| |||||||||||  | |||||||| ||||| || ||    |  |  ||| | |  |   |   ||  | ||||   |  |||||| | | ||  |     |||| | |     ||| ||| || |       
GGATGGTGTTAGTGAAGGGCAATTTTATCAAGTGCTACTTTATGAACTAGATGCAATCCGGAAAgtgagtttcagctttttattcttattttttccattctttaattaaaaatcatttgaaaccaaatagcaacccataggtccttataaataatttctacacag

upper sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ14096 (Selaginella moellendorffii), 5'ss of exon 16
------------------------------------GGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtc-agaattgattactttcttccatcaaatgttctaataggtcattttataacacgtgcccacaagaatatatatttgcag
                                     |||||||| || ||||| || || ||||||||||| ||| | ||||||||||||||| | |||||  || || ||     ||    |||  | || |  |     || ||||   |||                           
CTCTGGATACAAACCTGGAAGAATCATCTTCTACAGAGATGGTGTGAGCGAAGGACAGTTCTACCAAGTTCTCCTTCACGAGTTGGATGCAATTAGAAAGgtttagtatggaaagacttggcgcattgactgattcagctcttcgttttg-gacag--------------------------