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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagtggctctttttcaattgctataggatatacatgttgtaatccctgggctaggaatataatgaatcaatatcattgtctctattattttttt...

Basic information

species Glycine max
transcript GLYMA09G41330.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagtggctctttttcaattgctatagga-----tatacatgttgtaatccctgggc------taggaatat--------aatgaatcaatatcattgtctctattattttttt-----------------
|| ||||||||||| || ||||| |||||||||||||| || || |||||||||||| |||| ||||||||||||||||        | ||||     |||||   ||     | | |||| ||   |   ||         |||||||||        ||  |||  | ||  |      ||||     | |                 
GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgtttacttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatttgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336235|gb|GR842414.1|GR842414
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGACTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|254334604|gb|GR844389.1|GR844389
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|6951767|gb|AW423835.1|AW423835
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGACTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|6915664|gb|AW397194.1|AW397194
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|254334605|gb|GR844390.1|GR844390
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG