Sequence
atgc intronic sequence ATGC exonic sequenceTGAGTGGGACATCCTCTCCAACGGTGGACCAATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTgtatgtacacattcttttatctcttattatatcacatcataactataggttataaaaaaatatacacacaaaatgaaatgaggagttttgttcagaccaa...
Basic information
species | Glycine max |
transcript | GLYMA09G40130.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G40130.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ19972 (Selaginella moellendorffii), 5'ss of exon 10
TGAGTGGGACATCCTCTCCAACGGTGGACCAATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTgtatgtacacattcttttatctcttattatatcacatc-ataactataggttataaaaaaatatacacacaaaatgaaatgaggagttttgttcagaccaa
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----TGGGACATTCTCTCCAACGGTGGAATGGTGCAAGAGATGGCTCACATCGCCAAAGGACAGGATCCAGGCAACAGTGTCTCTCTTCTCCGTGTCAACgtaag----ctttcttggagctttcgatcttcgatctctagaactgaagcttcttcctgtctctctttccag-----------------------------
upper sequence: GLYMA09G40130.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ10492 (Selaginella moellendorffii), 5'ss of exon 10
TGAGTGGGACATCCTCTCCAACGGTGGACCAATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTgtatgtacacattcttttatctcttattatatcacatc-ataactataggttataaaaaaatatacacacaaaatgaaatgaggagttttgttcagaccaa
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----TGGGACATTCTCTCCAACGGTGGAATGGTGCAAGAGATGGCTCACATCGCCAAAGGACAGGATCCAGGCAACAGTGTCTCTCTCCTCCGTGTCAACgtaag----ctttcttggagctttcgatcttcgatctctagaactgaaacttattcctgtctctctttccag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208023144|gb|GD821476.1|GD821476EST: TTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGT GCTATAAATGCGAACCAG
genomic: TTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTgtatgtacac ... cttgttgcagGCTATAAATGCGAACCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGTGGGACATCCTCTCCAACGGTGGACCAATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTgtatgtacacattcttttatctcttattatatcacatcataactataggttataaaaaaatatacacacaaaatgaaatgaggagttttgttcagaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa