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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCACATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGgtgattatacattacttaagcttgtattttgcacaatcacctacttaggttgtttgttatattcttgaaaattaagcttgggatgcataaaggggacctccatatcagtgaaacatttaaatatggatctactgtctattactgaccttttttattaacaaaaaacactaatttatacattttttccatgtaag

Basic information

species Glycine max
transcript GLYMA09G39500.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193668696|gb|FK608216.1|FK608216
EST:     TCACATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTCAGG                         GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTG
genomic: TCACATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGgtgattatac ... tccatgtaagGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTG
EST: gi|9900391|gb|BE609359.1|BE609359
EST:     ATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAG                         GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTG
genomic: ATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGgtgattatac ... tccatgtaagGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTG
EST: gi|193645974|gb|FK593903.1|FK593903
EST:     TAATTACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAG                         GTCGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTG
genomic: TAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGgtgattatac ... tccatgtaagGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTG