1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcaccaaaaactaacttttataataaggtggcaaaagaaaagaaaagagatgagtaatcttttatagcctctattgggattatagtttccttgtt...
species | Glycine max |
transcript | GLYMA09G38110.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACEST: gi|27426098|gb|CA937618.1|CA937618
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcacc ... gatcctgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTAC
EST: CTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACEST: gi|16279376|gb|BI943404.1|BI943404
genomic: CTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcacc ... gatcctgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTAC
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACEST: gi|16283538|gb|BI945603.1|BI945603
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcacc ... gatcctgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTAC
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGACCGAGAAGAAGTACCTGTTAGACGTGGGTACCCCGGTTACEST: gi|16277730|gb|BI942533.1|BI942533
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcacc ... gatcctgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTAC
EST: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAG GTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTAC
genomic: TTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcacc ... gatcctgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcaccaaaaactaacttttataataaggtggcaaaagaaaagaaaagagatgagtaatcttttatagcctctattgggattatagtttccttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT