Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCTTCTGGCCATGGGACTATTGGTATGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctagttcgaatgtttatgttgctgaggctctgttgcatgttgtcttcaaggtggatcggtctgctgtttagtttgttaaattttgatgtcggtttggccttttttgttcaacatttacag

Basic information

species Glycine max
transcript GLYMA09G35980.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193475007|gb|FK441648.1|FK441648
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGAC
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGAC
EST: gi|24206180|gb|BU965433.1|BU965433
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|10237801|gb|BE806689.1|BE806689
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|208211468|gb|GE009547.1|GE009547
EST:     TGTTCGCGAGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|15204544|gb|BI427312.1|BI427312
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|15285708|gb|BI469599.1|BI469599
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|19348704|gb|BM893236.1|BM893236
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|19935308|gb|BQ080338.1|BQ080338
EST:     TTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|193519758|gb|FK476279.1|FK476279
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACA
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACA
EST: gi|14259863|gb|BG882771.1|BG882771
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTCTTCTGGCCATGGGACTATTGGTATGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctagttcgaatgtttatgttgctgaggctctgttgcatgttgtcttcaaggtggatcggtctgctgtttagtttgttaaattttgatgtcggtttggccttttttgttcaacatttacag

- - - - - - - - - - - - - - - - - - - - -  GGTGGA