1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCGTCCCTTTTTCTCTCTGCCAAAGGTTATGGATGGACTCTTTAACCTTGCAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactagattcccttctgttcagatttgattcttgtagggggagcatctattataaacttcctaacacaagtattgttattcag
species | Glycine max |
transcript | GLYMA09G33490.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|151410408|gb|EV280223.1|EV280223
genomic: GGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|192308087|gb|FK000415.1|FK000415
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|298198857|gb|HO042220.1|HO042220
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|6502048|gb|AW203421.1|AW203421
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|19347050|gb|BM891938.1|BM891938
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|254336791|gb|GR842970.1|GR842970
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTEST: gi|308098840|gb|HO760681.1|HO760681
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGT
EST: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCG GTCTGGAATAATGATG
genomic: CAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactaga ... tgttattcagGTCTGGAATAATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTCCCTTTTTCTCTCTGCCAAAGGTTATGGATGGACTCTTTAACCTTGCAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGgtaaactagattcccttctgttcagatttgattcttgtagggggagcatctattataaacttcctaacacaagtattgttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT