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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGGAAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTCTCTGCATTACAAATTTTGGCTGAGATTGGATTTCTCAACACACCAGAATCATGCACgttagtgatttttagtgttcaattgttattaactacttcataacggtgtttagtgccatttaaattttatcctagtgagtgaacttgttaatttctattttctatatccttatgacactgatggagatgctggatttctcag

Basic information

species Glycine max
transcript GLYMA09G32740.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
TTTTGGGAAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTCTCTGCATTACAAATTTTGGCTGAGATTGGATTTCTCAACACACCAGAATCATGCACgttagtgatttttagtgtt-caattgttattaactacttcataacggtgtttagtgccatttaaattttatcctagtgagtgaacttgttaatttctattttctatatccttatgacactgatggagatgctggatttctcag
|||||||||| || ||| |||| |||||||||||| | || ||||||||  | ||||| |||| ||||||||||||  || |||  || || || |||  || |||  || |||  ||  ||  || ||||    |   |||  |  | || |||      ||   |||||  | |  |   || |  ||     |  | |  |   |  || |  | || ||                    
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatt--tcatgccattgccattttcagta-----tagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag-----------------

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 8
TTTTGGGAAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTCTCTGCATTACAAATTTTGGCTGAGATTGGATTTCTCAACACACCAGAATCATGCACgttagtgatttttagtgttcaattgttattaactac-ttcataacggtgtttagtgccatttaaattttatcctagtgagtgaacttgttaatttctattttctatatccttatgacactgatggagatgctggatttctcag
| ||||| ||||| ||| ||||||| ||||||||||| || || |||||||| || ||||||  ||||||||||||  |       |||||||||||||||||||||||| |   | ||  ||  | |||  |    || ||   | |||||       |||   | |||   |||||| |  ||    | |||  |||||| |                                       
TATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTTGCCCAGAATCATGCACgttagtgattctagttatttcatcttgatttgcaggatttattctgttgtttt------tttttctattacagtagtga-tacacaatattattattattttttggc------------------------------------