1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAAGGGATCAAAGATACAAGGAGTTAGGATTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttgaaggcttctgctatattttagacattcttcaatgctcctgttttcttctgcttaaataatttgttaacccgtttgatattcccattcttct...
species | Glycine max |
transcript | GLYMA09G31920.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAA GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTEST: gi|120494352|gb|EH222519.1|EH222519
genomic: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttga ... cctgttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT
EST: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAA GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTEST: gi|9203341|gb|BE329627.1|BE329627
genomic: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttga ... cctgttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT
EST: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAA GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTEST: gi|51338349|gb|CO982215.1|CO982215
genomic: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttga ... cctgttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT
EST: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAA GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT
genomic: TTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttga ... cctgttgcagGTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGGATCAAAGATACAAGGAGTTAGGATTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttgaaggcttctgctatattttagacattcttcaatgctcctgttttcttctgcttaaataatttgttaacccgtttgatattcccattcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA