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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataattttttttaacaatacaacttgttcctctactcattctgtctaaataatatcaaatattgattttcag

Basic information

species Glycine max
transcript GLYMA09G25200.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G077222_T01 (Zea mays), 5'ss of exon 5
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatca---taattttttttaacaat--acaacttgttcctctactcattctgtctaaataatatcaaatattgattttcag
||  | |||||||||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| ||| | ||   ||     | |  ||  | |  | ||    |  |  |    || |||||  ||    ||
ACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgag-gcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtg-taatgtcattcatgttcattccaatat--atccatag

upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatca---taattttttttaacaat--acaacttgttcctctactcattctgtctaaataatatcaa-atattgat--tttcag
      |||||||||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| ||| | ||   ||     | |  ||  | |      ||  ||    | ||  ||| ||||  ||      ||
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAG-

upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G140874_T01 (Zea mays), 5'ss of exon 2
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatca---taattttttttaacaat--acaacttgttcctctactcattctgtctaaataatatcaaat---attgattttcag
||  | |||||||||||||  || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| ||| | ||   ||     | |  |   | |  | ||  | | | | | || |  | |   ||  |     ||
ACTTTCTCAAAAGTGTATCTAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgag-gcatgtctcgaagctaagtttatgtatggattagtgaatcatcattgtg-taatgttatgtcattcatgttcattccaatatacccatag

upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataattttttttaacaatacaacttgttcctctactcattctgtctaaataatatcaaatattgattttcag
|||   ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||||| | |  ||||| ||||||||||||||||||||||||||| ||    | || |   | |||  ||  ||   | ||   | |     |  || |    ||||||  | |  | | |    ||||||
ACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATTCAAGgtgagagt-gaactttgaattttgattctacccgaaaagaagat-----aaacaatgaagctaaattctgtttactct----tttcag

upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 6
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcata---attttttttaacaatacaacttgttc--ctctactcattctgtctaaataatatcaaatattgattttcag
 |||  |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| | |  || || || ||||||||| | | |||||||||| |  |  | |  |  |    |||   | | |      ||   ||     | |  | | ||||  |   | || |   ||       |  ||
TCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATTCAAGgtgatcatcgaattttttgtacattcactctgaagtctgaatcagtgaagttatgtttaatctgctttcttcatttttcattggatagtatag

upper sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 6
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatca-----taattttttttaacaatacaacttgttcctctactc---attctgtctaaataatatcaaatattgattttcag--------------------
||||||||||| || ||||| || ||||||||||  ||| ||||||| ||||||||||||||| | |  || || |||||||||||||| |||||||||||| |  |  |    | |     | |  ||   | |  ||| |    | |||| |  |    ||     ||   |  | |   ||   || |||                       
ACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGgtgataattgattctaaacttttgagcttcgatgatgatatagaaagatcctattgtttggatatgccctttgttttgttgcattaagagttttctcactaagttggatgtttcag