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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCTCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTATGGAATTTTCGGGAGgttggtacttcaacaataatttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttcttttcacttctatttttgcaaaatggatttggagaaaaacttcattgatagttgttgaaaatttgaaagaaactttcttgtccttaacag

Basic information

species Glycine max
transcript GLYMA09G09710.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G09710.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G11720.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCTCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTATGGAATTTTCGGGAGgttggtacttcaacaataatttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttcttttcacttctatttttgcaaaatggatttggagaaaaacttcattgatagttgttgaaaatttgaaagaaactttcttgtccttaacag
 ||||| |||||  | ||||||||||| ||    |||||||| || ||||||||||| | |||||  ||||||||||||||| ||||||| || || |||||| ||| ||       | || ||      ||  |  |   ||  |   |   ||| |       |    |  ||  ||  |||||                                                                                    
TAAAATCGGTGTTGGTTATGAAGCTTTCAACACCCAACCAAATTTCTGCTCTTCTCCATATTGGAGTTGCTTGCATAATCAACTATGGAACTTCCGTGAGgttagtattt-------atttgttacacctttctaaacacgttaccgcgtcattttcta------accgataacaagtttatttcag-----------------------------------------------------------------------------------

upper sequence: GLYMA09G09710.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 8
CAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCTCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTATGGAATTTTCGGGAGgttggtacttcaa-caataatttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttcttttcacttctatttttgcaaaatggatttggagaaaaacttcattgatagttgttgaaaatttgaaagaaactttcttgtccttaacag
 |||||||||||||| ||||| ||||| |||   || |||||||| || ||||| || |||||||  ||||||||||| || || |||||||| ||||| ||| |||  ||||    ||| |      | |  | ||| |  |||||   ||   |||||    || ||| | | ||||| | ||    | ||||  |  |                                                                      
TAAAATTGGTGTCAGTTATGAGGCTTTCAATGGGCAGCCAAACTTCTGTTCTTCCCCATTTTGGAATTGCTTGCATAACCAGTTGTGGAATTTCCGGGAAgttagtatatcaaattctaactagcaattacagtgattatatttctctgattagcttttt----tcttttatatgattttttgtttctgtgtattgctatatgt-------------------------------------------------------------------