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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctccatttcatttattgttttggactgaatatttcagcagttactggaactccatcaaattgcaggctactaaaatacatgatattgtatttag

Basic information

species Glycine max
transcript GLYMA09G04910.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 10
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctccatttcattta--ttgttttggactgaatatttcagcagttactggaactccatcaaattgcaggctactaaaatacatgatattgtatttag
| |||||||| ||| |  | || || ||  | || ||||||||||| || |||||||| || ||||||||||||||||| || ||||| || |     ||  || ||  |||   |  || |   || |  ||| |||  | |||    |     |      |  |||                     
GGCTTGCTGTGAGCCAACGGCACACATATTTATTTTCTGCTGGTGATGACAAACAAGTAAAGTGTTGGGATCTTGAACAAAACAAGgttagcttatagttcgatgtagattgcagtatacagggcatattggca-ttatcgtaacattttgtttcttttcatttttaag--------------------

upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G017089_T02 (Zea mays), 5'ss of exon 8
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctccatttcatttattgttttggactgaatatttcagcagttactggaactccatcaaattgcaggctactaaaatacatgatattgtatttag
| |||||||| ||| |  | || |||||  | || ||||||||||| || |||||||| |||||||||||||||||||| || ||||| || | | | ||   | |  ||| ||         ||||   |   |  ||  |    |||    |      |  ||||                    
GACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACAAACAAGTAAAATGTTGGGATCTTGAACAAAACAAGgttagttttactttaagtatggtgtattttgggtggcattttgacttctcttgacatctgatctgtatattctatgttaaag-------------------

upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 5'ss of exon 8
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgt-----cagatctccatttcatttattgttttggac-----tgaatatttcagca--gttactggaactccatcaaattgcaggctactaaaatacatgatattgtatttag-----------------
| ||||| || |||  | | ||| ||||  | ||||| |||||||| || ||||| || |||||||||||||||||| | ||||||||     |||   |  |   |  || ||| ||    |     | | || ||||  |  ||  ||   | |||||   | |  | |    ||      | ||| ||   | | |                 
GCCTTGCAGTGAGCGCCCGGCATCCTTATTTATTCTCAGCTGGTGATGACAAACAGGTCAAATGTTGGGATCTTGAATACAATAAGgtgtgtccaggcttttacgacgcttgttggttgtagcatccgtaattagttcatgaatgtgtctatgaatccat-gtactatatgtatttatcgctgaggatctttgctctggtgtattggtttgtgcag

upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S169_73V6.2 (Physcomitrella patens), 5'ss of exon 8
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctccatttcatttattgttttggactgaatatttcagcagttactg-----gaactccatcaaattgcaggctactaaaatacatgatattgtatttag----------
|||| || || ||     ||||| |||||||||| || |||||||| ||||| ||||| ||||| |||||||||||  | || |||||  | |||   |    || |   | ||     | |   || |   |   |||     ||  ||  |  || ||     | || | |  | |  | | | || | |          
GTCTCGCAGTGAGTGCTCGACATCCTTACATGTTTTCAGCTGGTGATGATAAGCAAGTCAAATGCTGGGATCTTGAGTACAACAAGgtgtgttctggctccttttaagcatattaatgcgtagcctttacttggctctgagtcagaggtcatttcaaatgtcattttctgagactc-tactctgggatatgggtttgctcag

upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ17196 (Selaginella moellendorffii), 5'ss of exon 4
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctccatttcatttattgttttggactga-atatttcagcagttactggaactccatcaaattgcaggctactaaaatacatgatattgtatttag
| || ||||||||     | ||| |||||||||| || ||||| ||||| || ||||| |||||||||||||| ||| | || ||||| ||   | | |  | ||  |  |||   ||| |   || || |  |                                                      
GGCTGGCTGTTAGTCCACGCCATCCTTACATGTTTTCGGCTGGAGACGACAAGCAAGTGAAATGTTGGGATCTCGAATACAACAAGgtgaggaatgcgtc-cgttcttaatttaaaactcatgcatgtctggggcag---------------------------------------------------

upper sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ31158 (Selaginella moellendorffii), 5'ss of exon 10
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctccatttcatttattgttttggactga-atatttcagcagttactggaactccatcaaattgcaggctactaaaatacatgatattgtatttag
| || ||||||||     | ||| |||||||||| || ||||| ||||| || ||||| |||||||||||||| ||| | || ||||| ||   | | | |   |  |  |||   ||| |   || |  |  |                                                      
GGCTGGCTGTTAGTCCACGCCATCCTTACATGTTTTCGGCTGGAGACGACAAGCAAGTGAAATGTTGGGATCTCGAATACAACAAGgtgaggaatgcgtct-gctcttaatttaaaactcatgcatgtttggggcag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193543318|gb|FK502497.1|FK502497
EST:     CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAG                         GTTATTAGATCTTA
genomic: CTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctc ... ttgtatttagGTTATTAGGTCTTA
EST: gi|254313963|gb|GR831592.1|GR831592
EST:     CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAG                         GTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
genomic: CTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctc ... ttgtatttagGTTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
EST: gi|208049582|gb|GD849367.1|GD849367
EST:     CTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAG                         GTTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTAATTAGCTTAGGCT
genomic: CTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGgtcagatctc ... ttgtatttagGTTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTA-TT-GCTT-GGCT