1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCCGTAATGACAAGATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcctttacataaaacttaaatgacatgtcttattacttaccttcttgccttgcttgtgtgctgcctgtcttccaatccttatgtatccttgtt...
species | Glycine max |
transcript | GLYMA09G01370.4 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|254315383|gb|GR825192.1|GR825192
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|120532773|gb|EH260906.1|EH260906
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|254314657|gb|GR829650.1|GR829650
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|120533916|gb|EH262049.1|EH262049
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|254314384|gb|GR831969.1|GR831969
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|21887763|gb|BQ740976.1|BQ740976
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|42722916|gb|CK768815.1|CK768815
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcc ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCCGTAATGACAAGATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTAAGAgtatgggtcctttacataaaacttaaatgacatgtcttattacttaccttcttgccttgcttgtgtgctgcctgtcttccaatccttatgtatccttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT