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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccgaagatattgtaccttctgtcattagcctagaggctttaacatatttaatgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttag

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g47410.2 (Oryza sativa), 5'ss of exon 10
GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaa-acccgaagatattgtaccttct-gtcattagcctagaggctttaacatatttaatgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttag
 |||| |||   ||  | |||||     | || || ||||| |||||||| |||||||||||||||||| |   |  ||| |  |   || | |  ||| |     |   |  | | | |  | |  || || | ||||   |  |   | ||||||    |   |||||        
ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttgtggatttgctgttttttagatattgg---gaactgtccagcctctacagttgtgggtttactgtggatgga---taattgaatgcgtagcatttta-------

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 10
GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccgaagatattgtaccttctgtcattagcctagaggctttaacatatttaatgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttag-------------------------------------------------------------
|||   ||| | ||||| ||||| |||||||| ||||| |||||||||||||||| ||||||| ||| |  |  || ||||  |  ||  | | || | | | |   |||||  |||  | || |   |        |||     || |      |       || ||    | ||                                                             
GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGGACTCGTGGTGTTGGgtcaggcgcaaaatatatt--ctattattatca-cattgtttctttattataaattatatcaggaaaaaaaaaatgcagcttgtgcatctgccaactgatgttattatcagttaccttatcctgactatatctatgtgataagctcattggttcatgaatgtgcttgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187278|gb|HO034427.1|HO034427
EST:     ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG                         CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
EST: gi|51335675|gb|CO979541.1|CO979541
EST:     ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG                         CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
EST: gi|298180046|gb|HO025261.1|HO025261
EST:     ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG                         CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAGGAAAATCATCTGGTAG
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
EST: gi|24136383|gb|BU926893.1|BU926893
EST:     ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG                         CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG