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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcattaataagctctaaagtgttatctgtcactactatattgatttcactgcacctggaaatgaagttctcagccacaacccttttgcttaatgatctattacag

Basic information

species Glycine max
transcript GLYMA09G00580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00580.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G473367_T01 (Zea mays), 5'ss of exon 5
ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcattaataagctctaaagtgttatctgtcactactatattgatttcactgcacctggaaatgaagttctcagccacaacccttttgcttaatgatctattacag
  |    | |||||||| |||||||||||||| |||||||||| ||||||  | || || ||||||  |||    ||| |    |||||||||   ||  |     ||| | |  |  | | | |    | || |  ||  | |    |      ||| | | ||     ||                           
GTTGCACTCGAACTATCATTTATGGAAGCAGTTCAAGGGTGCAGCAAAACGGTCACCTTCCAAACGTCTGTAACATGTGAAATCTGTGgtatgtagatgcagtttttctcatgactccttttttaggtatttagtccttctaatttttcccctggtgatgatttctttttcag--------------------------

upper sequence: GLYMA09G00580.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G48030.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat--taataagctctaaagtgttatctgtcactactatattgatttcactgcacctggaaatgaagttctcagccacaacccttttgcttaatgatctattacag
  |||  |||| || ||||| |||||||| || ||||| ||| |||||||| |||| |||||||| ||  ||  ||||||| |||||||||||   ||  |  |||| || |||||| | | | |   |  | | || || ||| |        |  |   ||| |   |      |||||  | |   |           
GTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatc-aaagtgctttatat-gttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag-----------

upper sequence: GLYMA09G00580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0064g01360.t01 (Vitis vinifera), 5'ss of exon 9
ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcattaataagctctaaagtgttatctgtcactactatattgatttcactgcacctggaaatgaagttctcagccacaacccttttgcttaatgatctattacag
  ||  |||||||||||||| |||||||| || || || ||||| |||||| | ||||||||||| | | ||| |||| | |||||||||||||| | || |  |   ||||    | | | | | |   | ||||  |  |||    ||     |    |||||     |     ||||  |      |||| ||   
GTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTGgtatgcttaata-tctgaagtaaacaaatgtttatgattttcagattggat--actaatgct-----ttctcttctcttgtcctgtattttttttggcgcttctaata---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326652|gb|FK017309.1|FK017309
EST:     GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG                         GTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGTAAGCCGTGTA
genomic: GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat ... tctattacagGTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGTAAGCCGTGTA
EST: gi|7924054|gb|AW830062.1|AW830062
EST:     GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG                         GTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGTAAGCCGTGTA
genomic: GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat ... tctattacagGTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGTAAGCCGTGTA
EST: gi|7796591|gb|AW781988.1|AW781988
EST:     GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG                         GTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGTAAGCCGTGTA
genomic: GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat ... tctattacagGTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGTAAGCCGTGTA
EST: gi|7284029|gb|AW596629.1|AW596629
EST:     GTGCACCAAAACTTTGACATTTCAAACAGATGTGCTGTGTAATGCTTGTG                         GTGGCAGTGGTGTTCCTCCTGGTACTAAGCCTGAAACTTGT
genomic: GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat ... tctattacagGTGGCAGTGGTGTTCCTCCTGGTACTAGGCCTGAAACTTGT