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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGgtgtgttggatatgctttaaaatctcatatacatgtttatttttattacattcttttattgacaaggttttgaaatgccttatatgcag

Basic information

species Glycine max
transcript GLYMA08G45990.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 8
ATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGgtgtgttggatatgctttaaaatc--tcatat--acatgtttatttttattacattcttttattgacaaggttttgaaa---tgccttatatgcag-----
  ||  || |||| |||||||| |||||||| || ||||| |||||||||||||  |   |   |  |   || |   ||| |   |||   | ||    |  ||||     | |  |||   | |   ||   |  |||  || | |     
GAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGgtaaggatggcttcttcacaagttattcaaaggaacaaactaatgcacac-acataacgatgtcaacacattctcacaagtatctctttcattctgtgcag

upper sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 9
ATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGgtgtgttggatatgctttaaaatctc-atatacatgttt--atttttattacat-tcttttattgacaaggttttgaaatgccttatatgcag
 ||||||| |||||||||| |||||||||||||| || ||||||||||| |||| |      | |||||||    ||| || | |||||||  |    ||  || | || |    | |||  || || ||||   | |  |||||
GTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGGgtatagcctgt-tgctttatttcctccatcttcatgttttgacgagtaccacttctcgtaggatcacatagtgtttaaat-tgtcacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345261|gb|BI970856.1|BI970856
EST:     GGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAG
genomic: GGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGgtgtgttgga ... ttatatgcagATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAG