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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGgtaagtaaacaggtttatttttttttgtttctaaacttggtgccagcatgcaagtttcttttaattattactgatcataattgctgcacttgaccag

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 8
ATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGgtaagtaaacaggtttatttttttttgtttctaaacttggtgccagcatgcaagtttcttttaattattactgatcataattgctgcacttgaccag
||||| || ||||| ||  | ||| | |||||    ||| |||  |||||||| ||||||||  ||||||| |||||||||||||| |||| | |  | |||||  |    | |||    ||  ||   |  |||| | |    | ||   |  |||   | ||| |              
ATACGAGGCATGCACACAATAATAAGGGATGCTGCCACAGCAACACATGATTTCATATTTTATGCTGATCGGTTGATTCGATTGgtcagtatataaatgtatttgatgagttatct----tttatgtgggtttgcatggtatcgtaaaac-tccctgtgaaaaatag--------------

upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 9
ATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGgtaagtaaa------caggtttatttttttttgtttctaaacttggtgccagcatgcaagtttcttttaatta------ttactgatcataattgctgcacttgaccag
||||||||||||||||| || |||||||||||  | |||||||||||||||||| | |||||  |||| || |||||||| |||||  |||         ||    | ||  ||   ||  |||  |     |  |   |   |||||||||| ||       | | | |||        || |  |   |||
ATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTGgtgggtattatttcctagagccacttggttcatttgataacttcttgacttggtagtgggtttcttttatttggttgattcatttatctagtcccttgtatctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240468|gb|BG359777.1|BG359777
EST:     ATATTTTACTCTGATCGTTTGATTCGATTG                         GTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATC
genomic: ATATTTTACTCTGATCGTTTGATTCGATTGgtaagtaaac ... acttgaccagGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATC