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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAGgtttgtttattatctgctatatattttcattgttcttactgttgaggttttgaaatttgaaataataagagatgagatgataaattgaataattgagaat...

Basic information

species Glycine max
transcript GLYMA08G42870.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42870.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G50710.1 (Arabidopsis thaliana), 5'ss of exon 9
GATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAGgtttgtttattatctgctatatattttcattgttcttactgttgaggttttgaaatttgaaataat--aagagatgagatgataaat---tgaataattgagaat
 |||||||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||||                  ||| | ||||     |||||||| ||| | | || ||     || |  |  || | ||||     ||   |   |  ||||    
AATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAGgt------------------ataatctcat--cctttactgtttaggatctaaatttcaggctattgcagtagttaagatatcttatctttctctgcttgaag--

upper sequence: GLYMA08G42870.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 9
GATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAGgtttgtttatt-atctgctatatatt-ttcattgtt-cttactgttgaggttttgaaatttgaaataataagagatgagatgataaattgaataattgagaat
|||||  | || || |||||||| |||||||||||||||||||||||||| |||||||||||||||  || | ||||||| |  | ||  ||| | | |    ||    ||    |   |  | |  |      | |  | | ||| |   |     ||   
GATGAACTACAAAAAACTTGGCTATGTAAAAGGTGTGAGACCATGAGTGCAAAATTGAGgtttgttgcttcagctgctattttctgtttgttgctgcatgacattagtattgcttagccttcattctttcatttttaattcagaaaattctttgcaaag---