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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag

Basic information

species Glycine max
transcript GLYMA08G35510.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 5'ss of exon 11
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag
|||||||||||||  | ||||| |||||  |||||||||||||||| ||||||||||| || ||||| ||| |||| ||||| || || |||||  |   |  ||  |  |||          | |   ||  | | | ||  | |  | ||| |   |   || | |||||  ||  |                                     
GTCCAACTCATGTTTTAGTTGTTCGTGGTCTGGATGAAAATGCTGACGAGGAAATGCTTCGATATGAATTTGCCAAGCATGCACCTATAAAGgtggg---aagaagcttatgactc------ttgaaatttgcagtgttccgtttctgttgagagaatgacatgctgttgtt-gtgcag-------------------------------------

upper sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G173777_T01 (Zea mays), 5'ss of exon 10
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag
|||||||||||||  | ||||| ||||| ||||||||||||||||||||||||||||| || || || ||| | || || || || || |||||  ||  | ||||        ||| ||   | |   || |  |||   | || |     |   || | |  ||||                                                
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCAATAAAGgt--gggcaataaa--------ctaattgcttgaggtttattttatttttctggac--acgttacatgttatttctcaccag------------------------------------------

upper sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G151614_T03 (Zea mays), 5'ss of exon 11
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag
|||||||||||||  | ||||| ||||| || |||||||||||||||||||||||||| || || || ||| | || || || || ||||| | | ||  |  || |  |||    | |    |  || | ||  | ||   |  ||||       || |    |||| |                                              
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTAGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACC-ATTAAAGgtggggaataaactaattgcttgattcggtttctcttgtttttctgg--acacatta------catgtaatttctcgccag------------------------------------------

upper sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcct-atgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag
||||||||||||| || ||||| ||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||| || |||||||    |  |   | |||   | |||  ||| |     || | | | | ||   |  |  |  | || ||  || | |||  |      | ||                              
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaa-caaaaacccttttggattcgttgtcta-ttaagatattgtactttatatgtcagttgacctggttt--tcctctttccgccattttgtag-----------------------------

upper sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
GTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacag
|||| |  |||||  | ||||| || || ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||||      ||| || |||   | || ||   |||| ||  |  |     | | |||        |   ||| |||||| | || ||   ||||  |                            
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgt------actcaagtgt--ggttattttgttaatactggt-tttcaattttacatct-----tctaagtttttcttgctaatttta--atttgcag---------------------------