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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattgtcttctcagtcttagctttgtacttactggttcaagttactttgatgctttgtttttatatttcactttgtgatatgcaaaactaagaat...

Basic information

species Glycine max
transcript GLYMA08G33560.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g23890.2 (Oryza sativa), 5'ss of exon 9
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattgtcttctcagtcttagctttgtacttactggt-tcaagt-tactttgatgctttgtttttatatttcactttgtgat-atgcaaaactaagaat
 |||||||||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||  ||||||  ||| ||||| || |||||  |    |  | ||  || |||  ||     | | || | |||| | ||  ||| ||  |  | |||  ||||     |  ||| |    || |||   | 
GCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTGAACCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCAAATTGgtaggc-cagcttact--gtattaatttccatttcaatgatctcaaatataaattggtgtataatattttaatttaggaataagatgagatgaatctagagac

upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 8
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagt-attgtcttctcagtcttagctttgtacttactggttcaagttactttgatgctttgt-ttttatatttcactttgtgatatgcaaaactaagaat--
 ||||||||||||||||| |||||| | |||||||| || ||||| |||||| | |  || || || |||||||  ||||| | |||||||||||| |||||   | | | | ||||||||   |  |||    ||  ||||| ||  ||  |  ||  |  ||     |||   ||  || | | ||| ||||| ||      
GCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTAAATTGgtagctcaatctattctcagt---aattttcattttgatggtttaaactagatctataataggtgcacaataagccaactt-taaaatgtaaaacaaaatgagg

upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G58140.4 (Arabidopsis thaliana), 5'ss of exon 10
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattgtcttctcagtcttagctttgtacttactggttcaagttactttgatgctttgtttttatatttcactttgtgatatgcaaaactaagaat
 |||||||||||||| ||||| || || |||||||||||||||||||| ||| |  |||| ||  ||||||||| ||| |||   || ||| | || |||||  ||  | || | ||   || || ||| |    |    ||     |     ||  || ||   ||   |  || |||  |                  
GCTTCAATACTTCATCGGTGTGCAGCTTGATGGAAGTGATCATGTAGAGCCCCTCCAAAATCGTTTGTCTGAGAGAACAGAGATGCAGAGTTCGAAATTGgtatgtggt-tcatatcctactgagttttttgaacatctctttcctatcaaaggagactatgacattg-gtcacaattttag------------------

upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 9
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtat-tgtcttctcagtcttagctttgtacttactggttcaagttactttgatgctttgtttttatatttcactttgtgat-atgcaaaactaagaat--
||||||||||||||||||||| ||| ||||||||||||||||| | |||||| |   |||||||||||| |||  |||||||||||||||||||||| ||||   ||| | | ||| |  |||| |  ||||  |||   ||  |||||    |||   | ||     | |||  |        | || || | |||  |||  
ACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTAAGCTGgtatatatattttttcaccatctttgaattgt--ttatgagtggaagttggactgag--tgtgggggaagattctaaacaaaactgatacagatctagaaatga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306491|gb|CD391694.1|CD391694
EST:     CCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTG                         GTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGAT
genomic: CCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattg ... ttcatatcagGTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGAT