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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGAACAGCTTTTCCCCCAAATTTCGTTCACTCTCTTGATGGTTCTCACATGATGATGACTACAGTTGCTTGTAAAAAAGCAGGGTTGAACTTTGCAGgtgcttattggtttatataacacgcacatatacagtcatatgtgaatgaaatttgtttgtgctcttgttatgtacatcaatgttgacttttgattaggaatttaaatttgtaaatcgatgcttaaatgcag

Basic information

species Glycine max
transcript GLYMA08G32320.6
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G32320.6 (Glycine max), 5'ss of exon 9
lower sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 17
CAGAGAACAGCTTTTCCCCCAAATTTCGTTCACTCTCTTGATGGTTCTCACATGATGATGACTACAGTTGCTTGTAAAAAAGCAGGGTTGAACTTTGCAGgtgcttattggtttatata-------acacgcaca-------tatacagtc-atatgtgaatgaaatttgtt--tgtgctcttgttatgtacatcaatgttgacttttgattaggaatttaaatttgtaaatcg-atgcttaaatgcag-------------------
|| | ||  |||||||| |||||||| || || ||||||||| || ||||||||||||||||| |  | |||||| || | |||||  | |  ||||||||| | || |  | |||| |       |   |||         | | || || |||||     |    || |   | |  | |  | ||| |||||   ||  | | ||   |    |      ||      ||  | ||||| |||                      
CAAAAAAGTGCTTTTCCACCAAATTTTGTACATTCTCTTGATAGTACTCACATGATGATGACTGCCTTGGCTTGTCAAGAGGCAGGTCTTACTTTTGCAGgtacataattatgtatacatagcttgatgtgcattctattattctgcattcgatatgcagtaggtgcttatggatttattttcttcatgaacatcctcgtaaattcttttcttattacagcttttctccgttcacaagcttacatgtttttgttgtttgtaactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311229|gb|BG404943.1|BG404943
EST:     CATGATGATGACTACAGTTGCTTGTAAAAAAGCAGGGTTGAACTTTGCAG                         GGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACA
genomic: CATGATGATGACTACAGTTGCTTGTAAAAAAGCAGGGTTGAACTTTGCAGgtgcttattg ... ttaaatgcagGGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACA