Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACTGATATGACAAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggccttcatctttctttcaaatagatttcaaaatgttaagcattatgtgtttggatatacaaacatacatgcttcttaattgtgggacag

Basic information

species Glycine max
transcript GLYMA08G21830.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g62040.1 (Oryza sativa), 5'ss of exon 9
AGGAACTGATATGACAAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggccttcatctttctttcaaatagatttcaaaatgttaagcattatgtgtttggatatacaaacatacatgcttcttaattgtgggacag
||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||| ||||||||  ||||||| |||||  |||| ||||| |||||    ||   ||     || | |||  |||  ||     |||  || | | |||||   |||       |||    | ||                
AGGAACTGATATGACAAGTCCGCATGGTATACCAGTTGATCTTCTAGATCGATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtt---tgattttgggtcttatatcagttaggctttttc-tgtctagaaatgtgtgt---gattcttgctcatcgccgtttgcag------------

upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g08170.1 (Oryza sativa), 5'ss of exon 9
AGGAACTGATATGACAAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggccttcatctttctttcaaatagatttcaaaatgttaagcattatgtgtttggatatacaaacatacatgcttcttaattgtgggacag
||||||||||||||||||||| ||||| ||||| ||||| ||  | ||  | |||||||| ||||||||  |||||||||||||  |||| ||||| |||||    ||   ||     || | |||  |||  ||     |||| || |  ||||||||| || |     |||   | ||    |            
AGGAACTGATATGACAAGTCCACATGGTATACCAGTTGATCTTCTAGACAGATTGGTGATTATTCGAACAGAAACATATGGTCCCACTGAGATGATCCAGgtt---tgattttggatcttatatcacttaggctttcc--tgtttagaa--atgtgtttg-atctttgctcat-tgtcctctacag-----------

upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G032267_T02 (Zea mays), 5'ss of exon 9
AGGAACTGATATGACAAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggccttcatctttctttcaaatagatttcaaaatgttaagcattatgtgtttggatatacaaacatacatgcttcttaattgtgggacag
|||||| |||||||| ||||| ||||| ||||| || |||||  | ||| |||||||||| ||||| ||  |||||||||| ||| |||| |||||||||||          || | |||  ||     |   || |     ||     || | |    |  | | |  | ||   || | |||     |   ||||
AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGGTTGGTGATTATTCGGACAGAAACATATGGCCCTACTGAGATGATACAGgt----------tcttatttaatttgggcatgctttatgtcttttttttttctat-ccagagtttgcgtaaatctttgttccttgcccttt--acag

upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G018697_T04 (Zea mays), 5'ss of exon 3
AGGAACTGATATGACAAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggccttcatctttctttcaaatag-atttcaaaatgttaagcattatgtgtttggatatacaaacatacatgcttcttaattgtgggacag
||||||||||||||||||||| ||||| ||||| || || ||  | ||| || ||||||| ||||| ||  | |||||||| ||| |||| |||||||||||          || |  || |||        ||||| |  ||||     |  ||||   | || | ||   ||   || ||  |     |   ||||
AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAGgt----------tcttacttatttggggcgttatttctatctgttgtttttcctgtgca-gaattttcattaatctttgtttgctgcccttt--acag

upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 5'ss of exon 9
AGGAACTGATATGACAAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagt-----atggcct------tcatctttctttcaaatagatttcaaaatgttaagcattatgtgtttggatatacaaacatacatgcttcttaattgtgggacag----
||||||||||||||  |||||||||||||||||||||||| |||| || |||||||||||  | || ||| |||| |||||||||||||| ||||| |||||  |     ||    |      |  |  ||  || ||     ||||||  | |  | ||   | |         | | | |  |  |  |||||  |||| |  |      
AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCGGTTGGTGATTGTACGGACGGAAACTTATGGTCCTGCTGATATGATTCAGgtcatcgtctatcatttggagacttgttcttagtttaacccactttcaacttctggaacacattatcaaattccctcctatctgatgtttttcttctttgttgatcgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930082|gb|BU547221.1|BU547221
EST:     GGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAG                         ATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT
genomic: GGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggc ... tgtgggacagATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT
EST: gi|213600069|gb|DB976028.1|DB976028
EST:     GGTTGGTTATCAATCGAACGCAAACATATGCTTCTGCTGAAATGATACAG                         ATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT
genomic: GGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGgtagtatggc ... tgtgggacagATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT