Sequence
atgc intronic sequence ATGC exonic sequenceGCATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatttgttttgtatttaactcaaaattgaccatgtttatactattgttag
Basic information
species | Glycine max |
transcript | GLYMA08G21610.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G52150.2 (Arabidopsis thaliana), 5'ss of exon 8
GCATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatttgttttgtatttaactcaaaattgaccatgtttatactattgttag
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GAATTTTGTGAGAGCAGAGATGCTTTCCAGTGGGTACTTGATACGGCCTTGTGATGGTGGTGGCTCAATCATACACATAGTGGATCATATGGATTTGGAGgta-acgagcctcactc--tgcaccaattctaatggtcttggaaatgttaaccaaactgtttggatatttgttcacttaaatag-------------------------------------------------------------------
upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 8
GCATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtaca----ttaatttgaattgttgcatcaacacacacacacacacacacacacacacacac-acatatatatatatatatatata-tatatatatatat-atatatatatttgttttgtatttaactcaaaattgaccatgtttatactat-tgttag
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GCATTTTGTGAGAGCAGAAATGCTGCCAAGTGGCTACTTGATAAGACCTTGTGAAGGGGGTGGTTCAATCATACATATTGTTGATCATATGGATTTAGAGgtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaaccttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctag
upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ26528 (Selaginella moellendorffii), 5'ss of exon 8
GCATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatttgttttgtatttaactcaaaattgaccatgtttatactattgttag
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CGACTTTGAGAGGGCAGAGATGTTGCCGAGTGGATTTCTCATCAGGCCTTATGAGGGTGGTGTCTCCAGCATCCACGTTGTTGATCATTGGGATTTGGAGgtagtgtagattgt-ttgtgtttacggttgatgaattctcttgtttcag------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193704835|gb|FK645697.1|FK645697EST: GTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAG CCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTA
genomic: GTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaat ... ctattgttagCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatttgttttgtatttaactcaaaattgaccatgtttatactattgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG