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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATTCACATACCGGCAGAGCCTAGTGCAATTGTAGAGGATAATAGACCACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAGgtaacgaactaaccaaatatatacttatgtgattgcgtctcttttccacctttatccatgttcatgacaaatgaattcaagtctgattctctgtacaacgatttcag

Basic information

species Glycine max
transcript GLYMA08G20780.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
ATTCATTCACATACCGGCAGAGCCTAGTGCAATTGTAGAGGATAATAGACCACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAGgtaacgaactaaccaaatatatacttatgtgattgcgtctcttttccacctttatccatgttcatgacaaatgaattcaagtctgattctctgtacaacgatttcag
 ||||| ||||||||  |||||||   ||||||||| ||||| || || |||||| |||| ||||||||||||||||| |||||  | |||| |||  | || | ||| |      |  |    |||  ||| || || || ||   || |         || |  | |  | |||   |   || ||   | |     | ||||||
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaattcttcta-gttcttttaaatgactgtgt-tccttagtacttg-------attgaaaatacttaaatctgatgatgctttcttttcggtgggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727578|gb|BU761822.1|BU761822
EST:     CACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAG                         ATTAGATATCGGCCAAATGCTCCATTAGTTCTTAAGGGCATCTCTTGTAGG
genomic: CACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAGgtaacgaact ... acgatttcagATTAGATATCGGCCAAATGCTCCATTAGTTCTTAAGGGCATCTCTTGTAGG