1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaacttctagccaattctctctgcagccttgggcaagaatctattgctgctttactcttttgaggtttaactttaggaggaattcaaaatcatagttgttcttacatgttgtacttttaaagcattcaattcgcaaattaagaaattggaacaatttagctattgaagtctaattctgacaagttatacag
species | Glycine max |
transcript | GLYMA08G20770.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|22928798|gb|BU545937.1|BU545937
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|19269944|gb|BM886200.1|BM886200
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|12496579|gb|BG047135.1|BG047135
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|16348727|gb|BI974322.1|BI974322
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|16341698|gb|BI967293.1|BI967293
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|51344886|gb|CO985619.1|CO985619
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|7691104|gb|AW759237.1|AW759237
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCEST: gi|20207790|gb|BQ133879.1|BQ133879
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
EST: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTG TGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
genomic: TCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaac ... agttatacagTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGgtgagtaaacttctagccaattctctctgcagccttgggcaagaatctattgctgctttactcttttgaggtttaactttaggaggaattcaaaatcatagttgttcttacatgttgtacttttaaagcattcaattcgcaaattaagaaattggaacaatttagctattgaagtctaattctgacaagttatacag
- - - - - - - TCAGCT
- - - - - - - CAGCTC
- - - - - - - - AGCTCA
- - - - - - - - - - AAGGAA