1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaactagctctgcagttgaaaaatgttatatttaaataccattctcttctatgtgagcttttcaataagctcaggtttggttatgtttaatttgtatatag
species | Glycine max |
transcript | GLYMA08G20770.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCTCTAGGCCTGTACTCAGATGATGAAATATGGGAG GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCEST: gi|22928798|gb|BU545937.1|BU545937
genomic: CCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaac ... ttgtatatagGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
EST: GGACCAACTTGGACCCTNNAGGCCTGTACTCAGATGATGAAATATGGGAG GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCEST: gi|19269944|gb|BM886200.1|BM886200
genomic: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaac ... ttgtatatagGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
EST: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAG GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCEST: gi|16348727|gb|BI974322.1|BI974322
genomic: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaac ... ttgtatatagGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
EST: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAG GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCEST: gi|7691104|gb|AW759237.1|AW759237
genomic: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaac ... ttgtatatagGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
EST: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAG GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCEST: gi|20207790|gb|BQ133879.1|BQ133879
genomic: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaac ... ttgtatatagGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
EST: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAG GCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
genomic: GGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaac ... ttgtatatagGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaactagctctgcagttgaaaaatgttatatttaaataccattctcttctatgtgagcttttcaataagctcaggtttggttatgtttaatttgtatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG