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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTCACCAAGCTGCTAAAGTCATGGAGGAGCTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAgtatcttctaacctgatgagttctattaatttttattctgcaatgattagatacttcatctttctaacctccttctttttttcttttttactcttatccgtgctctttag

Basic information

species Glycine max
transcript GLYMA08G20730.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208127605|gb|GD924847.1|GD924847
EST:     CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGA                         ATGTGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
genomic: CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAgtatcttcta ... tgctctttagATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
EST: gi|207733286|gb|GD710060.1|GD710060
EST:     CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGA                         ATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
genomic: CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAgtatcttcta ... tgctctttagATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
EST: gi|193559174|gb|FK515933.1|FK515933
EST:     ATGCATATAGA                         ATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
genomic: ATGCATATAGAgtatcttcta ... tgctctttagATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
EST: gi|298171891|gb|HO021483.1|HO021483
EST:     CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGA                         ATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
genomic: CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAgtatcttcta ... tgctctttagATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
EST: gi|208077267|gb|GD876058.1|GD876058
EST:     GTCATCAGATCGGGGTGGCATGCATATAGA                         ATATGCAAGGTCTAAAATGAGGAAAGACGTTAAGGAGAAACGGGAGCTAGA
genomic: GTCATCAGATCGGGGTGGCATGCATATAGAgtatcttcta ... tgctctttagATATGCAAGGTCTAAAATGAGG-AAG-CGTT-AGGAGAAACGGGAGCTAGA
EST: gi|151394965|gb|EV264836.1|EV264836
EST:     CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGA                         ATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG
genomic: CTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAgtatcttcta ... tgctctttagATATGCAAGGTCTAAAATGAGGAAGCGTTAGGAGAAACGGGAGCTAGACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAACTCACCAAGCTGCTAAAGTCATGGAGGAGCTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAgtatcttctaacctgatgagttctattaatttttattctgcaatgattagatacttcatctttctaacctccttctttttttcttttttactcttatccgtgctctttag

- - - - - - - - - - - - - - - - - - - - - - - TGCTGC