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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACGATTTTACACCCAAGGTCTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaagaatcccttgctagccatttcatgttgatgctttgatgatgtgatagttaaacatgcattcaatcattcaatgtacttatttctttccagtatctt...

Basic information

species Glycine max
transcript GLYMA08G20590.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20590.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 9
AGTACGATTTTACACCCAAGGTCTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaagaatcccttgctagccatttcatgttgatgctttgatgatgtgatagttaaacatgcattcaatcattcaatgtacttatttctt-tccagtatctt-
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AACATGACTTTACACCTAAAGTTTCTGACTTTGGTTTGGCTAGAACAGCACTTGACGAGGGGAACAAACATATCTCAACACGCGTGATGGGAACTTTTGGgtactaatttccttcacccgtcatcatatttactcccttacaa-attttaatttcat-tgcatccaaattttctcctttataaccactaatatggtttgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270646|gb|BM886902.1|BM886902
EST:     CTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGG                         CTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA
genomic: CTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaagaatcc ... tgttttgcagCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA
EST: gi|57574179|gb|CX547154.1|CX547154
EST:     TGGATGAGAGAAACAAGCACATCTCCACACATG-TATGGGGAACATTTGG                         CTACTTAGCTCNTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA
genomic: TGGATGAGAGAAACAAGCACATCTCCACACATGTTAT-GGGAACATTTGGgtaagaatcc ... tgttttgcagCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA
EST: gi|254328009|gb|GR834974.1|GR834974
EST:     CTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGG                         CTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA
genomic: CTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaagaatcc ... tgttttgcagCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA