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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGgtgtgattgtgtgatgaagttttttgtttcatatcatatatgcccatattttgtttttaaatttgtgtctgattgtggattgcttctttgttag

Basic information

species Glycine max
transcript GLYMA08G20320.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204184|gb|BI426952.1|BI426952
EST:     GAGAAGAAAGTTTCTACTTCTATTGAG                         TCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC
genomic: GAGAAGAAAGTTTCTACTTCTATTGAGgtgtgattgt ... tctttgttagTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC
EST: gi|26048756|gb|CA785209.1|CA785209
EST:     AGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAG                         TCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC
genomic: AGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGgtgtgattgt ... tctttgttagTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC
EST: gi|298187041|gb|HO034190.1|HO034190
EST:     AGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAG                         TCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTGCTGC
genomic: AGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGgtgtgattgt ... tctttgttagTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC
EST: gi|14990359|gb|BI316032.1|BI316032
EST:     AGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAG                         TCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC
genomic: AGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGgtgtgattgt ... tctttgttagTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGgtgtgattgtgtgatgaagttttttgtttcatatcatatatgcccatattttgtttttaaatttgtgtctgattgtggattgcttctttgttag

- - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA