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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcctttactgaagcatagtttttgttatgcaagtttcaactaaagttagttgattcatatttgattttcattctcattctgtag

Basic information

species Glycine max
transcript GLYMA08G18810.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 9
GCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcctttactgaagcatagtttttgttatgcaagtttcaactaaagttagttgattcatatttgatt-ttcatt--ctcattctgtag-----------------------
|| |||||||||||| |||| || || ||||||||| || ||||||||||||| || || |||| |  | ||  || |      | |||||   |||  |    ||| |||     |    |||    |||| || || |||  |||||| | ||                        
GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGgtattttcccagtattctgagtttgtttta--tatttagacctcagctatgtcaatgatattttgctttgtttatttatttgctcattttttaattgttgcatgcaactttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207827324|gb|GD798349.1|GD798349
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
EST: gi|207760220|gb|GD731905.1|GD731905
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
EST: gi|9204058|gb|BE330282.1|BE330282
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
EST: gi|193481178|gb|FK447305.1|FK447305
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC