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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgttaccatgttattttacgaagcaattaccttgtgaatgtaattgagcgcctgaaaaagaaattatcaaccttatttag

Basic information

species Glycine max
transcript GLYMA08G17450.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0085g00870.t01 (Vitis vinifera), 5'ss of exon 8
GGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgttaccatgttattttacgaagcaatta--------ccttgtgaatgtaattgagcgcctgaaaaagaaattatcaaccttatttag------------------
||||   |||| || || | ||||||||||||||| |||| | | |||||||||||||||||| ||||  | |  |  |   | |  | ||| || |||        | |||||||||| ||||   |    || || | |  || |        ||                   
GGTGCTCTGAATGTTGTCACGGGAAATGCTCCTGACATTGAGCATGCTTTACTTGCAAGTCCAAAGgtattttagcttttgaaatagaggaatcatttatgcaacatctttgtgaatgtcattggatgtacaaacaatacaacattagttactcatacttctaagaattttttcag

upper sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 9
GGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgt------------------------taccatgttatt--ttacgaagcaattaccttgtgaatgtaattgagcgcctgaaaaagaaattatcaaccttatttag-------------------------
||||  ||||| |||||  | |||||||||||||| |||||||| ||||||||||||||||  |||||  |||                        | ||   |||||  ||  || |||    |||| || ||   ||||      || || | |||| ||  |||||   |||                         
GGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtaccttttgaaatagagggaaaatttccccaattattactttggatgcagcatccttatggatagtattggat--ttggaatacaaatgatacacctttagtagctcatacttttaacaacttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278230|gb|BI942795.1|BI942795
EST:     TAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAG                         GTAAGGAAGATCACATTCACAGGCTCGACAGCAGTTGGGAAGAAATTGATG
genomic: TAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgttac ... ccttatttagGTAAGGAAGATCACATTCACAGGCTCGACAGCAGTTGGGAAGAAATTGATG