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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagatctctctccgcag

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 9
lower sequence: AT3G60070.1 (Arabidopsis thaliana), 5'ss of exon 12
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacag-cattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagatctctctccgcag
|| |   |  |   |||||| |||||||||   || || ||||| || || ||||| || || ||||| |||||| ||||||||||||||||| ||||||||||||    |||   |||      | ||||||      | ||  ||||  ||| ||  |||| ||     | | || |    | |  |  | | |   | ||    | |                       
GGTGCAGAAGTCGGTGGTTGCGCATTTGTTTGCGGCTCGTTGAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCTATATGTTCTTCAGTCACACCAAAgtaagtcaaataa---tctgatgactggaacatggc-cctataaagttt-ataaccattcatttttcaccgtgagattagcggttttgtgctgaaactgtttttggtttacag--------------------

upper sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 9
lower sequence: AT2G44280.2 (Arabidopsis thaliana), 5'ss of exon 12
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttc-------atattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagatctctctccgcag
||   ||| ||    || ||||| || |||  ||| ||||| || || || |||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| ||   ||||||||       || || ||  | ||     | |  ||| | |||  |    |                                                                     
GGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttt-ttgtctttctttctaatattatcttaaaattgatggaagtctaatttggaaaatggtgcag---------------------------------------------------------------------

upper sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagatctctctccgcag
|| ||  | ||  |||| ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| || || |  |||||| ||||| |   ||||||||   |  ||  |  |     || ||   | | | || | |||  |   |  ||   |    |    | |   |   ||   | ||| |  |||    ||                            
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgat--aagctagtcatccttcaatgctttttatc-agtgtcaccagactagacctaaagcagcccttgcaaggcttacta-catga-gtatgacccat---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         CTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAAGGATTGGTTTGGGT
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... ctctccgcagCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAAGGATTGGTTTGGGT