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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctacaaattttgtccattttaagttcattgtagttcatttagcttcaaataatttgaagtttgaatgatggcatggctgattacactgcctgatgatgttttacatag

Basic information

species Glycine max
transcript GLYMA08G16870.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 10
GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatc-tacaaattttgtccattttaagttcattgtagttcatttagcttcaaataatttgaagtttgaatgatggcatggctgattacactgcctgatgatgttttacatag
||||  |||||||||| |||||| ||||| || |||||| | |||||| | |||||||||||| |  ||||||  ||  |    | || || ||   | ||      |  |  ||  |||| |||    ||| ||| ||   |||||||   ||  | ||  || | |   |||
GCATTTCTTGCTTTCTATGTCATTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTGgtacttatacaaacctttccaccatcaaatttatcccaatt------gtgtataaccatttcaag----aatcatg-caaaactgattatcttgtttaat--tgatgtgagtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG                         GTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
EST: gi|11274169|gb|BF324537.1|BF324537
EST:     CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG                         GTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
EST: gi|6667043|gb|AW278502.1|AW278502
EST:     CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG                         GTTCCTGCTCTCATATACATCTGCAGCTGTGTTGTGTCTATA
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATA
EST: gi|27427316|gb|CA938836.1|CA938836
EST:     CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG                         GTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     CTTTCTTTGTCATTAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG                         GGTCCTGCTCTCATATACTTCTGCAGCTTT
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTT